View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13807_low_1 (Length: 815)
Name: NF13807_low_1
Description: NF13807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13807_low_1 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 719; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 719; E-Value: 0
Query Start/End: Original strand, 24 - 815
Target Start/End: Original strand, 7308793 - 7309589
Alignment:
| Q |
24 |
ttgagaattcgaaaagaaaataataatataaaagagcatctaatcgtccaaaggaattcagatttccttattcggaaaaatctcgcaataaccatgtcat |
123 |
Q |
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| T |
7308793 |
ttgagaattcgaaaagaaaataataatataaaagagcatctaatagtccaaaggaattcagatttccttattcggaaaaatctcgcaatcaccatgtcat |
7308892 |
T |
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| Q |
124 |
taactatcggatcaagattgaacg-tgtagatttcaacgtcgagtcgagatgttggtgtttaaggaaatcaaataaaaactttgtttgaaatcttcattc |
222 |
Q |
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| T |
7308893 |
taactatcggatcaagattgaacggtgtagatttcaacgtcgagtcgagatgtcagtgtttaaggaaatcaaataaaaactttgcttgaaatcttcattc |
7308992 |
T |
|
| Q |
223 |
ttagatcttaatccaacagtcaccaacatatgagtccgtgaatgctggattttagcaacagaaaggaatccaaattctcctcct---aacctagcagcct |
319 |
Q |
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| T |
7308993 |
ttagatcttaatccaacagtcaccaacatatgagttcgtgaatgctggattttagcaacagaaagaaatccaaattctcctccttataacctagcagcct |
7309092 |
T |
|
| Q |
320 |
tatgcttaatattaataaaa-tttaacacaaaaataatggaattaaagttgaagcaaaataacatatactcaccagtgacaccagaaacaacatcagtag |
418 |
Q |
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|||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7309093 |
tatgcttaatattaataaaaatttaacacacagataatggaattaaagttgaagcaaaataacatatactcaccagtgacaccagaaacaacatcagtag |
7309192 |
T |
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| Q |
419 |
cagaaataggataaaaaggaagttcagtttcattagcaatagcatgagcaagtctagttttcccacaaccaggtggtccgtgcagcaaaattcccgtcaa |
518 |
Q |
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| T |
7309193 |
cagaaataggataaaaaggaagttcagtttcattagcaatagcatgagcaagtctagttttcccacaaccaggtggtccgtgcagcaaaattcccgtcaa |
7309292 |
T |
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| Q |
519 |
tggttccaaacctaactttttacccaactcagggtaacacagtaaattaagaggcacttccaattccttctttatcttctccatcctattccctgctaaa |
618 |
Q |
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| T |
7309293 |
tggttccaaacctaactttttacccaactcagggtaacacagtaaattaagaggcacttccaattccttctttatcttctccatcctattccctgctaaa |
7309392 |
T |
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| Q |
619 |
tccttaaacatcggccctttcttaacatcaccactgcggccaacaccggaggctgcattagggatcgaacttttccttaaaacatccggttcctctactt |
718 |
Q |
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| T |
7309393 |
tccttaaacatcggccctttcttaacatcaccactgctgccaacaccggaggctgcattagggatcgaacttttccttaaaacatccggttcctctactt |
7309492 |
T |
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| Q |
719 |
ttttgatgtagttctcggaatcataattagaggaagctccagtgcccattcttccatatctcattcttccaagatcatcatcatcagcatcagcatc |
815 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
7309493 |
ttttgatgtagttctcggaatcataattagaggaagctccagtgcccattcttccatatctcattcttccaagatcatcagcatcagcatcatcatc |
7309589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 403 - 512
Target Start/End: Original strand, 7299415 - 7299524
Alignment:
| Q |
403 |
gaaacaacatcagtagcagaaataggataaaaaggaagttcagtttcattagcaatagcatgagcaagtctagttttcccacaaccaggtggtccgtgca |
502 |
Q |
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| T |
7299415 |
gaaacaacatcagtagcagagacaggataaaagggaacttcagcttcattagcaatagcataagcaagcatagtttttccacaaccagatggcccatgta |
7299514 |
T |
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| Q |
503 |
gcaaaattcc |
512 |
Q |
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| T |
7299515 |
acaaaattcc |
7299524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 6e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 396 - 509
Target Start/End: Complemental strand, 786654 - 786541
Alignment:
| Q |
396 |
gacaccagaaacaacatcagtagcagaaataggataaaaaggaagttcagtttcattagcaatagcatgagcaagtctagttttcccacaaccaggtggt |
495 |
Q |
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|||||||||||| || || ||||| |||||| ||| ||||||||| | || || |||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
786654 |
gacaccagaaaccacctcggtagccgaaatacgatgaaaaggaagaccggtctcgttagcaatagcatgagcaagtctagtctttccacaaccaggtggt |
786555 |
T |
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| Q |
496 |
ccgtgcagcaaaat |
509 |
Q |
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| T |
786554 |
ccatgcagcaaaat |
786541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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