View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13807_low_4 (Length: 333)

Name: NF13807_low_4
Description: NF13807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13807_low_4
NF13807_low_4
[»] chr5 (18 HSPs)
chr5 (19-317)||(37429085-37429387)
chr5 (62-194)||(37594800-37594932)
chr5 (62-283)||(37697174-37697395)
chr5 (62-283)||(37824282-37824503)
chr5 (80-194)||(37533576-37533690)
chr5 (62-194)||(37400364-37400496)
chr5 (80-194)||(37703144-37703258)
chr5 (27-179)||(37412793-37412945)
chr5 (238-317)||(37640225-37640304)
chr5 (93-191)||(37436186-37436284)
chr5 (238-283)||(37400540-37400585)
chr5 (238-283)||(37533487-37533532)
chr5 (238-283)||(37594711-37594756)
chr5 (238-283)||(37703055-37703100)
chr5 (84-192)||(37640350-37640458)
chr5 (71-194)||(37712100-37712223)
chr5 (238-283)||(37712011-37712056)
chr5 (102-194)||(37392484-37392576)
[»] chr4 (3 HSPs)
chr4 (238-283)||(24217468-24217513)
chr4 (94-194)||(16842460-16842560)
chr4 (238-283)||(16842604-16842649)
[»] chr3 (1 HSPs)
chr3 (238-283)||(14553497-14553542)


Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 317
Target Start/End: Complemental strand, 37429387 - 37429085
Alignment:
Q  19 aacttcaacggtatgatctcggatgtgttccacaagcttaccgaattagaaaatttagtattttcctttaataa----cctaataggccaagttccatca 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    ||||| ||||||||||||||||    
T  37429387 aacttcaacggtatgatctcggatgtgttccacaagcttaccgaattagaaattttagtattttcctttaataaataacctaacaggccaagttccatca 37429288  T
Q  115 tcattgtttcatctcactcagctttctatgttagatttatcgtttaataaattagatggcccaattccgattcaaatcaccaaattttccaagttacatt 214  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  37429287 tcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggcccaattccgattcaaatcaccaaattttccaagttaaatt 37429188  T
Q  215 ttgttcttttacaatctaacaacttaaacggaacaattccacactggtgttattccttgccttcgttgtcatggttgtatctcaatgataactaactcac 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37429187 ttgttcttttacaatctaacaacttaaacggaacaattccacactggtgttattccttgccttcgttgtcatggttgtatctcaatgataaccaactcac 37429088  T
Q  315 agg 317  Q
    |||    
T  37429087 agg 37429085  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 62 - 194
Target Start/End: Complemental strand, 37594932 - 37594800
Alignment:
Q  62 aattagaaaatttagtattttcctttaataacctaataggccaagttccatcatcattgtttcatctcactcagctttctatgttagatttatcgtttaa 161  Q
    |||| ||| |||||| | |||||||||| ||||||| ||||||||||||||||||| | ||||||||  |||| |||||||| |||| |||||| | |||    
T  37594932 aattggaatatttagcactttcctttaacaacctaacaggccaagttccatcatcactttttcatctacctcacctttctattttaggtttatcatataa 37594833  T
Q  162 taaattagatggcccaattccgattcaaatcac 194  Q
     ||| ||| ||| |||||||| ||| |||||||    
T  37594832 caaactagttgggccaattccaattgaaatcac 37594800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 283
Target Start/End: Complemental strand, 37697395 - 37697174
Alignment:
Q  62 aattagaaaatttagtattttcctttaataacctaataggccaagttccatcatcattgtttcatctcactcagctttctatgttagatttatcgtttaa 161  Q
    |||| ||| |||||| | |||||| ||| ||||||| ||||||||||||||||||| | ||||||||  | || ||||||   |||| |||||| |||||    
T  37697395 aattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatctaccccacctttctcatttaggtttatcatttaa 37697296  T
Q  162 taaattagatggcccaattccgattcaaatcaccaaattttccaagttacattttgttcttttacaatctaacaacttaaacggaacaattccacactgg 261  Q
     ||| ||| ||| |||||||| ||| ||||||| |||  |||||| ||   || |||  ||||  |   |||||  ||||| |||||||||||||| |||    
T  37697295 caaactagttgggccaattccaattgaaatcacaaaacgttccaaattgagttatgtgtttttggatgataacatgttaaatggaacaattccacattgg 37697196  T
Q  262 tgttattccttgccttcgttgt 283  Q
    |||||||| |||||||||||||    
T  37697195 tgttattctttgccttcgttgt 37697174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 283
Target Start/End: Complemental strand, 37824503 - 37824282
Alignment:
Q  62 aattagaaaatttagtattttcctttaataacctaataggccaagttccatcatcattgtttcatctcactcagctttctatgttagatttatcgtttaa 161  Q
    |||| ||| |||||| | |||||| ||| ||||||| ||||||||||||||||||| | ||||||||  |||| ||||||   ||| ||||||| | |||    
T  37824503 aattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatctacctcatctttcttatttatatttatcatctaa 37824404  T
Q  162 taaattagatggcccaattccgattcaaatcaccaaattttccaagttacattttgttcttttacaatctaacaacttaaacggaacaattccacactgg 261  Q
     ||| ||| |||||||||||| ||| ||||||| |||  ||| || ||   | ||||   ||||   | |||||  ||||| |||||||||||||| |||    
T  37824403 caaactagttggcccaattccaattgaaatcacaaaacgttcaaaattgagtattgtggatttaagctttaacatgttaaatggaacaattccacattgg 37824304  T
Q  262 tgttattccttgccttcgttgt 283  Q
    |||||||| |||||||||||||    
T  37824303 tgttattctttgccttcgttgt 37824282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 194
Target Start/End: Complemental strand, 37533690 - 37533576
Alignment:
Q  80 tttcctttaataacctaataggccaagttccatcatcattgtttcatctcactcagctttctatgttagatttatcgtttaataaattagatggcccaat 179  Q
    |||||| ||| ||||||| ||||||||||||||||||| | ||||||||  |||| |||||||| |||| |||||| | ||| ||| ||| ||| |||||    
T  37533690 tttcctctaacaacctaacaggccaagttccatcatcactttttcatctacctcacctttctattttaggtttatcatataacaaactagttgggccaat 37533591  T
Q  180 tccgattcaaatcac 194  Q
    ||| ||| |||||||    
T  37533590 tccaattgaaatcac 37533576  T

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Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 62 - 194
Target Start/End: Original strand, 37400364 - 37400496
Alignment:
Q  62 aattagaaaatttagtattttcctttaataacctaataggccaagttccatcatcattgtttcatctcactcagctttctatgttagatttatcgtttaa 161  Q
    |||| ||| |||||| | |||||| ||| ||||||| ||||||||||||||||||| | ||||||||  |||| ||||||   ||| ||||||| | |||    
T  37400364 aattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatctacctcatctttctcatttatatttatcatctaa 37400463  T
Q  162 taaattagatggcccaattccgattcaaatcac 194  Q
     ||| ||| |||||||||||| ||| |||||||    
T  37400464 caaactagttggcccaattccaattgaaatcac 37400496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 80 - 194
Target Start/End: Complemental strand, 37703258 - 37703144
Alignment:
Q  80 tttcctttaataacctaataggccaagttccatcatcattgtttcatctcactcagctttctatgttagatttatcgtttaataaattagatggcccaat 179  Q
    |||||| ||| || |||| ||||||||||||||||||| | ||||||||  |||| |||| ||| |||| |||||| ||||| ||| ||| ||| |||||    
T  37703258 tttcctctaacaagctaacaggccaagttccatcatcactttttcatctacctcacctttttattttaggtttatcatttaacaaactagttgggccaat 37703159  T
Q  180 tccgattcaaatcac 194  Q
    ||| ||| |||||||    
T  37703158 tccaattgaaatcac 37703144  T

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Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 179
Target Start/End: Original strand, 37412793 - 37412945
Alignment:
Q  27 cggtatgatctcggatgtgttccacaagcttaccgaattagaaaatttagtattttcctttaataacctaataggccaagttccatcatcattgtttcat 126  Q
    |||| |||||| | || ||||||| |||||||   |||||||| ||||||   |||||| ||| ||| | | ||| ||| |||| ||||||||||| |||    
T  37412793 cggtttgatcttgaatatgttccataagcttattaaattagaatatttagatatttcctctaacaacattacaggtcaaattccctcatcattgttccat 37412892  T
Q  127 ctcactcagctttctatgttagatttatcgtttaataaattagatggcccaat 179  Q
    ||  |||| ||||||   ||||||||||| ||||||||||||| |||||||||    
T  37412893 ctagctcaactttcttatttagatttatcatttaataaattagttggcccaat 37412945  T

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Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 317
Target Start/End: Complemental strand, 37640304 - 37640225
Alignment:
Q  238 ttaaacggaacaattccacactggtgttattccttgccttcgttgtcatggttgtatctcaatgataactaactcacagg 317  Q
    ||||| |||||||||||||| ||||||||||| ||||||||||||| |  |||||| |||| ||| ||| | ||||||||    
T  37640304 ttaaatggaacaattccacattggtgttattctttgccttcgttgttagagttgtacctcagtgacaacaatctcacagg 37640225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 191
Target Start/End: Complemental strand, 37436284 - 37436186
Alignment:
Q  93 cctaataggccaagttccatcatcattgtttcatctcactcagctttctatgttagatttatcgtttaataaattagatggcccaattccgattcaaat 191  Q
    ||||| ||||||||||||||||||| | ||||||||  | || ||||||   ||||||||||| ||||| ||| ||| |||||||||||| ||| ||||    
T  37436284 cctaacaggccaagttccatcatcactttttcatctaccccacctttctcatttagatttatcatttaacaaactagttggcccaattccaattgaaat 37436186  T

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Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 283
Target Start/End: Original strand, 37400540 - 37400585
Alignment:
Q  238 ttaaacggaacaattccacactggtgttattccttgccttcgttgt 283  Q
    ||||| |||||||||||||| ||||||||||| |||||||||||||    
T  37400540 ttaaatggaacaattccacattggtgttattctttgccttcgttgt 37400585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 283
Target Start/End: Complemental strand, 37533532 - 37533487
Alignment:
Q  238 ttaaacggaacaattccacactggtgttattccttgccttcgttgt 283  Q
    ||||| |||||||||||||| ||||||||||| |||||||||||||    
T  37533532 ttaaatggaacaattccacattggtgttattctttgccttcgttgt 37533487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 283
Target Start/End: Complemental strand, 37594756 - 37594711
Alignment:
Q  238 ttaaacggaacaattccacactggtgttattccttgccttcgttgt 283  Q
    ||||| |||||||||||||| ||||||||||| |||||||||||||    
T  37594756 ttaaatggaacaattccacattggtgttattctttgccttcgttgt 37594711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 283
Target Start/End: Complemental strand, 37703100 - 37703055
Alignment:
Q  238 ttaaacggaacaattccacactggtgttattccttgccttcgttgt 283  Q
    ||||| |||||||||||||| ||||||||||| |||||||||||||    
T  37703100 ttaaatggaacaattccacattggtgttattctttgccttcgttgt 37703055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 192
Target Start/End: Complemental strand, 37640458 - 37640350
Alignment:
Q  84 ctttaataacctaataggccaagttccatcatcattgtttcatctcactcagctttctatgttagatttatcgtttaataaattagatggcccaattccg 183  Q
    |||||| ||||||| ||||||||||||||||||| | ||||||||  |||| ||||||   ||| ||||| | | ||| ||| ||| ||||||||||||     
T  37640458 ctttaacaacctaacaggccaagttccatcatcactttttcatctacctcatctttctcatttatatttagcatataacaaactagttggcccaattcca 37640359  T
Q  184 attcaaatc 192  Q
    ||| |||||    
T  37640358 attgaaatc 37640350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 71 - 194
Target Start/End: Complemental strand, 37712223 - 37712100
Alignment:
Q  71 atttagtattttcctttaataacctaataggccaagttccatcatcattgtttcatctcactcagctttctatgttagatttatcgtttaataaattaga 170  Q
    |||||| | |||||| ||| ||||||| ||||||||||||||||||| | ||||||||  |||| ||||||   ||| ||||| |   ||| ||| |||     
T  37712223 atttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatctacctcatctttctcatttatatttagcagataacaaactagt 37712124  T
Q  171 tggcccaattccgattcaaatcac 194  Q
    |||||||||||| ||| |||||||    
T  37712123 tggcccaattccaattgaaatcac 37712100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 283
Target Start/End: Complemental strand, 37712056 - 37712011
Alignment:
Q  238 ttaaacggaacaattccacactggtgttattccttgccttcgttgt 283  Q
    ||||| |||||||||||||| ||||||||||| |||||||| ||||    
T  37712056 ttaaatggaacaattccacagtggtgttattctttgccttcattgt 37712011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 194
Target Start/End: Original strand, 37392484 - 37392576
Alignment:
Q  102 ccaagttccatcatcattgtttcatctcactcagctttctatgttagatttatcgtttaataaattagatggcccaattccgattcaaatcac 194  Q
    |||||||||||||||| | ||||||||  |  | |||||| | ||||||||||| | ||| ||| ||| ||||||||||||  ||||||||||    
T  37392484 ccaagttccatcatcactttttcatctacccaacctttcttttttagatttatcatctaacaaactagttggcccaattccagttcaaatcac 37392576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 283
Target Start/End: Original strand, 24217468 - 24217513
Alignment:
Q  238 ttaaacggaacaattccacactggtgttattccttgccttcgttgt 283  Q
    ||||| ||||||||||| || |||||||||||||||||||||||||    
T  24217468 ttaaatggaacaattccgcaatggtgttattccttgccttcgttgt 24217513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 194
Target Start/End: Original strand, 16842460 - 16842560
Alignment:
Q  94 ctaataggccaagttccatcatcattgtttcatctcactcagctttctatgttagatttatcgtttaataaattagatggcccaattccgattcaaatca 193  Q
    |||| ||||||||||||||||||| | ||||||||  || | |||||||  ||| ||||||| ||||| ||| | | |||||||||||| ||| ||||||    
T  16842460 ctaacaggccaagttccatcatcactttttcatctaccttatctttctaatttatatttatcatttaacaaactggttggcccaattccaattgaaatca 16842559  T
Q  194 c 194  Q
    |    
T  16842560 c 16842560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 283
Target Start/End: Original strand, 16842604 - 16842649
Alignment:
Q  238 ttaaacggaacaattccacactggtgttattccttgccttcgttgt 283  Q
    ||||| |||||||||||| | ||||||||||| |||||||||||||    
T  16842604 ttaaatggaacaattccaaattggtgttattctttgccttcgttgt 16842649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 283
Target Start/End: Complemental strand, 14553542 - 14553497
Alignment:
Q  238 ttaaacggaacaattccacactggtgttattccttgccttcgttgt 283  Q
    ||||| |||||||||||||| ||||||||||| |||||||||||||    
T  14553542 ttaaatggaacaattccacattggtgttattctttgccttcgttgt 14553497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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