View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13808_high_11 (Length: 470)
Name: NF13808_high_11
Description: NF13808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13808_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 424; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 16 - 459
Target Start/End: Complemental strand, 38869117 - 38868674
Alignment:
| Q |
16 |
tgtgactgaacaagtatgttgtgcctctttcggtggcttctcgtgaatacttccaatatctttaagaggaaaatctatgtaagattataagatagctttg |
115 |
Q |
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| T |
38869117 |
tgtgactgaacaagtatgttgtgcctctttcggtggcttctcgtgaatacttccattgtctttaagaggaaaatctatgtaagattataagatagctttg |
38869018 |
T |
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| Q |
116 |
acataatgaaaaattcaaaaccactagattattgaggaaaaaatatgagagacatttttcaagccttcagcaaattatgattatttgaagatttgttcac |
215 |
Q |
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| T |
38869017 |
acataatgaaaaattcaaaaccactagattattgaggaaaaaatatgagagacatttttcaagccttcagcaaattatgattatttgaagatttgttcac |
38868918 |
T |
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| Q |
216 |
atatatctagattgagacctggttcaaatggtggagctgaatcatttgaatatgcatgatgtttacatacatctatgatactcaagactattatgcccta |
315 |
Q |
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| T |
38868917 |
atatatctagattgagacctggttcaaatggtgaagctgaatcatttgaatatgcatgatgtttacatacatatatgatactcaagactattatgcccta |
38868818 |
T |
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| Q |
316 |
aataatgaacccattatttgtctgagcaaggtgctttgtgaatgtggcacataataacaagcttatatagatcctttttcgtcttttaatgcattgtgat |
415 |
Q |
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| T |
38868817 |
aacaatgaacccattatttgtctgagcaaggtgctttgtgaatgtggcacataataacaagcttatatagatcctttttcgtcttttaatgcattgtgat |
38868718 |
T |
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| Q |
416 |
cataaagacaagatcatgtgatgtgaagcagctagcatgttgtg |
459 |
Q |
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| T |
38868717 |
cataaagacaagatcatgtgatgtgaagcagctagcatgttgtg |
38868674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 38868681 - 38868643
Alignment:
| Q |
31 |
atgttgtgcctctttcggtggcttctcgtgaatacttcc |
69 |
Q |
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| T |
38868681 |
atgttgtgcctctttcggtggcatctcgtgaatacttcc |
38868643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 38866360 - 38866303
Alignment:
| Q |
160 |
atgagagacatttttcaagccttcagcaaa-ttatgattatttgaagatttgttcaca |
216 |
Q |
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| T |
38866360 |
atgagagacatttttcaaggcttcaccaaagttatgattattgaaagatttgttcaca |
38866303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 216
Target Start/End: Original strand, 38807049 - 38807104
Alignment:
| Q |
162 |
gagagacatttttcaagccttcagcaaa-ttatgattatttgaagatttgttcaca |
216 |
Q |
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| T |
38807049 |
gagagacatttttcaaggcttcagcaaagttatgattatcgaaagatttgttcaca |
38807104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 38749717 - 38749774
Alignment:
| Q |
160 |
atgagagacatttttcaagccttcagcaaa-ttatgattatttgaagatttgttcaca |
216 |
Q |
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||||||||||||||||||| ||||| |||| ||||||||||| |||||| ||||||| |
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| T |
38749717 |
atgagagacatttttcaaggcttcaccaaagttatgattattgaaagattagttcaca |
38749774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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