View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13808_high_17 (Length: 427)
Name: NF13808_high_17
Description: NF13808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13808_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 10 - 408
Target Start/End: Complemental strand, 34282889 - 34282491
Alignment:
| Q |
10 |
attattctcacttattccaaatcttgtcaccaaaagcccttctccaattggcaaaagttgagtctttgatccacatgataaccaagaccctttgcaacta |
109 |
Q |
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| T |
34282889 |
attattctcacttattccaaatcttgtcaccaaaagcccttctccaattggcaaaagttgagtctttgatccacatgataaccaagaccctttgcaacta |
34282790 |
T |
|
| Q |
110 |
aatccattgtaccccacaacatttacatttctaccctcttgaattgttttgagaatctcttcatgattcttaatgttacaatcaatgagcaaaaaatcag |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34282789 |
aatccattgtaccccacaacatttacatttctaccctcttgaattgttttgagaatctcttcatgattcttaatgttacaatcaatgagcaaaaaatcag |
34282690 |
T |
|
| Q |
210 |
ctgcttcatattggtccaatagaagcacttcttgagcttttccaaccatgaattggacttgatgtgaagcaattcctaaggcatgtttggatgcaattag |
309 |
Q |
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| T |
34282689 |
ctgcttcatattggtctaacataagtacttcttgagcttttccaaccatgaattggacttgatgtgaagcaattcctaagacatgtttggatgcaattag |
34282590 |
T |
|
| Q |
310 |
atctttatggttagggacaatacaaattacttgtccaccagtttgattagcagcagcaattaaagctagtgtggtagaatctgctacattagcacatgc |
408 |
Q |
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| T |
34282589 |
atctttatggttagggacaatacaaattacttgtccgccagtttgattggcagcagcaattaaagctagtgtggtagaatctgctacattagcacatgc |
34282491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 130
Target Start/End: Original strand, 20749834 - 20749939
Alignment:
| Q |
25 |
tccaaatcttgtcaccaaaagcccttctccaattggcaaaagttgagtctttgatccacatgataaccaagaccctttgcaactaaatccattgtacccc |
124 |
Q |
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|||||||||||| ||||| | ||||| |||||| || | | |||||| ||||||||||| ||| ||| |||||||| |||||||| ||||||| || |
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| T |
20749834 |
tccaaatcttgttaccaacaacccttgtccaataggaagcaattgagtttttgatccacaagatctccatgaccctttagaactaaatgcattgtaacca |
20749933 |
T |
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| Q |
125 |
acaaca |
130 |
Q |
| |
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|||||| |
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| T |
20749934 |
acaaca |
20749939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 130
Target Start/End: Original strand, 20761846 - 20761951
Alignment:
| Q |
25 |
tccaaatcttgtcaccaaaagcccttctccaattggcaaaagttgagtctttgatccacatgataaccaagaccctttgcaactaaatccattgtacccc |
124 |
Q |
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|||||||||||| ||||| | ||||| |||||| || | | |||||| ||||||||||| ||| ||| |||||||| |||||||| ||||||| || |
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| T |
20761846 |
tccaaatcttgttaccaacaacccttgtccaataggaagcaattgagtttttgatccacaagatctccatgaccctttagaactaaatgcattgtaacca |
20761945 |
T |
|
| Q |
125 |
acaaca |
130 |
Q |
| |
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|||||| |
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| T |
20761946 |
acaaca |
20761951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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