View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13808_high_18 (Length: 412)
Name: NF13808_high_18
Description: NF13808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13808_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 17 - 395
Target Start/End: Complemental strand, 117065 - 116686
Alignment:
| Q |
17 |
tccaacagtagacattctaacgattgagatcctaaaagagaaaagttatacatggcctgccttaaggtcctcctaagggtatgacataagttcatca-aa |
115 |
Q |
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| T |
117065 |
tccaacagtagacattctaacgattgagatcctaaaagagaaaagttatacatggcctgccttaaggtcctcctaagggaatgacataagttcatcagaa |
116966 |
T |
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| Q |
116 |
gatagaatgttataagcctttgacataaggctggccaattatttgattatctgcctaagtataagcaaatccggatattagatagtcataagattcctca |
215 |
Q |
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| T |
116965 |
gattgaatgttataagcctttgacataaggctggccaattatttgattatctgcttaagtataagcaaatccggatattagatagtcataagattcctca |
116866 |
T |
|
| Q |
216 |
agctgaggacatcataggcaactccaacaaccactcaacatttaattgcattgtcatttgaaaatctattaaaaaataatgagggtatgtttaagctagc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
116865 |
agctgaggacatcataggcaactccaacaaccactcaacatttaattgcattgtcatttgaaaatctattaaaaaataatgagggtatgtttaagctagc |
116766 |
T |
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| Q |
316 |
aaataagagaatgcttgagatgggcatcgaaatcgattctttcccagtcacgaaaaatggccatggtatcattctctgag |
395 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
116765 |
aaataagagaatgcttgagatggacatcgaaatcgattctttcccagtcacgaaaaatggccatggtatcattctctgag |
116686 |
T |
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