View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13808_high_19 (Length: 400)
Name: NF13808_high_19
Description: NF13808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13808_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 6e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 227 - 384
Target Start/End: Complemental strand, 10354353 - 10354196
Alignment:
| Q |
227 |
cagagatgggaaagtgggttgagattgttgatcaaggaatgaggattgttgcaagatcttattccaactgtcctcaaacgggaaggaagttttatcatcc |
326 |
Q |
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| T |
10354353 |
cagagatgggaaagtgggttgagattgttgatcaaggaatgaggattgttgcaagatcttattccaactgtcctcaaacgggaaggaagttttatcatcc |
10354254 |
T |
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| Q |
327 |
tccgcctcattctgaaggaggagctgctgtcaacggttgcggcggcggtggcaaatct |
384 |
Q |
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| T |
10354253 |
tccgcctcattctgaaggaggagctgctgtcaacggttgcggcggcggtggcaaatct |
10354196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 10354565 - 10354482
Alignment:
| Q |
15 |
aagtccaaaaatgacactaccgcactataaatacacacaaacaacgccttctgttttcacaacgcattctctctcttacaaatg |
98 |
Q |
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| T |
10354565 |
aagtccaaaaatgacactaccgcactataaatacacacaaacaacgccttctgttttcacaacgcattctctctcttacaaatg |
10354482 |
T |
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