View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13808_high_22 (Length: 345)
Name: NF13808_high_22
Description: NF13808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13808_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 17 - 326
Target Start/End: Complemental strand, 1963240 - 1962931
Alignment:
| Q |
17 |
tcagacactcaaacttattagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1963240 |
tcagacactcaaacttattagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcatctgt |
1963141 |
T |
|
| Q |
117 |
cattgcttctataggacccttttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1963140 |
cattgcttctataggacccttttcaatttccaggaagctattaataagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaa |
1963041 |
T |
|
| Q |
217 |
gattgacttgatctatcttgagctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1963040 |
gattgacttgatctatcttgagctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcac |
1962941 |
T |
|
| Q |
317 |
atgaagtttc |
326 |
Q |
| |
|
|||||||||| |
|
|
| T |
1962940 |
atgaagtttc |
1962931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 326
Target Start/End: Original strand, 2015190 - 2015498
Alignment:
| Q |
18 |
cagacactcaaacttattagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtc |
117 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2015190 |
cagacattcaaacttattagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtc |
2015289 |
T |
|
| Q |
118 |
attgcttctataggacccttttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaag |
217 |
Q |
| |
|
| ||||||||||||||| ||||| ||||| | ||| |||||||| |||| ||||||||||||||| ||||||||||||| |||||| ||| | ||||||| |
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| T |
2015290 |
agtgcttctataggaccgttttcgatttctatgaaactattaataagaataccatcaaaaagacgcaatttttcaacaccttggagtaagtatttgtaag |
2015389 |
T |
|
| Q |
218 |
attgacttgatctatcttgagctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcaca |
317 |
Q |
| |
|
||||||| ||||||||||||||||| |||| || |||||||||||||||||| |||| ||||||||||||||||||| | ||||||||||||||||| || |
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| T |
2015390 |
attgactggatctatcttgagctagctcaaaaagatcccgaccatgaatcggaacactacctggtatttgaataggcccaggaagatctctgtactcgca |
2015489 |
T |
|
| Q |
318 |
tgaagtttc |
326 |
Q |
| |
|
||| ||||| |
|
|
| T |
2015490 |
tgatgtttc |
2015498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 33 - 326
Target Start/End: Original strand, 2018588 - 2018881
Alignment:
| Q |
33 |
attagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctatagga |
132 |
Q |
| |
|
|||| |||||||||| ||| | ||| | ||||||||||| |||||||||||||| ||| | |||| |||||| || ||||| | ||||||||||||| |
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|
| T |
2018588 |
attatcatcatcacccgatttggttggcgtttggataattggtccaacagcataaacatcagggttgccacttctgtcttctgtgagtgcttctatagga |
2018687 |
T |
|
| Q |
133 |
cccttttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctat |
232 |
Q |
| |
|
|| ||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||| || || ||||| |||||||||||||||||||||| |
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|
| T |
2018688 |
cctttttcaatttctaggaagctattaataagaataccatcaaaaagacggaatttttcaacacgttcaagtaagaatttgtaagattgacttgatctat |
2018787 |
T |
|
| Q |
233 |
cttgagctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttc |
326 |
Q |
| |
|
|||||||| |||||| || |||| |||||||||| || ||||| ||||||||||||||||||||| |||||||| |||||| |||||| ||||| |
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|
| T |
2018788 |
cttgagcttggtcaacaagatcctgaccatgaattggtacacagcctggtatttgaataggctctagaagatctttgtactgacatgatgtttc |
2018881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 2433128 - 2432951
Alignment:
| Q |
18 |
cagacactcaaacttattagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtc |
117 |
Q |
| |
|
||||||||| ||| ||||||||||||| |||| |||||| ||| ||||| ||||||||||||| |||||||||| | |||||||||||||| |||||| |
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|
| T |
2433128 |
cagacactccaacatattagcatcatcgtcagaacttgttattgtctggatgatgggtccaacaggatacacaagaggattttcacttccttcatctgtc |
2433029 |
T |
|
| Q |
118 |
attgcttctataggacccttttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaaca |
195 |
Q |
| |
|
| ||||| |||||||||| |||| ||||| | ||||||||||| ||||||||||||| || |||| |||||| |||| |
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|
| T |
2433028 |
agtgcttttataggacccctttccatttctaagaagctattaacaagaacaccatcaacaaaacggtattttttaaca |
2432951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 33 - 326
Target Start/End: Original strand, 2008191 - 2008484
Alignment:
| Q |
33 |
attagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctatagga |
132 |
Q |
| |
|
||||||||||||||||||| ||||| ||||| |||||| |||||||||| |||||| || |||| |||| ||| || ||| ||||||| || |||| |
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|
| T |
2008191 |
attagcatcatcaccagattttgtttctgtttcgataataggtccaacaggatacactggagggttgtcacctccctcctctttcattgcacttagagga |
2008290 |
T |
|
| Q |
133 |
cccttttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctat |
232 |
Q |
| |
|
||| | || ||||| ||||||||||||| |||||||||||| | || || || |||| || |||| ||| ||||||| |||||||||||||| |
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|
| T |
2008291 |
cccatctctatttctaggaagctattaacaagaacaccatcagcagaacttaaaagtttaacaaatgggaggaagtgtttgtaagcttgacttgatctat |
2008390 |
T |
|
| Q |
233 |
cttgagcta-ggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttc |
326 |
Q |
| |
|
||||||||| | ||||| ||||||| ||||| | || |||||||||||||||| ||||||||| | | |||||| ||||||||||| ||||| |
|
|
| T |
2008391 |
cttgagctatgctcaag-aaatccctgccatggagtggtacacaacctggtatttttataggctctagtatatctctatactcacatgatgtttc |
2008484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 33 - 319
Target Start/End: Original strand, 2011806 - 2012092
Alignment:
| Q |
33 |
attagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctatagga |
132 |
Q |
| |
|
||||||||||||| |||| ||||| ||| ||||| ||||||||||||| ||| ||| | |||| |||||||||| ||||||| ||| | |||||| |
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|
| T |
2011806 |
attagcatcatcaacagaacctgttactgtctggatgatgggtccaacaggatagacagaagggttgccacttccttcctctgtcaatgcatttataggt |
2011905 |
T |
|
| Q |
133 |
cccttttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctat |
232 |
Q |
| |
|
||| |||| ||||| | ||||||||||| |||||||||||| || || || ||| |||| ||| || ||| | ||||||| |||||||||||||| |
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|
| T |
2011906 |
cccatttccatttctaagaagctattaacaagaacaccatcagcaaaacttaaacttttaacatgttgaaggaagtatttgtaagcttgacttgatctat |
2012005 |
T |
|
| Q |
233 |
cttgagcta-ggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatg |
319 |
Q |
| |
|
||||| ||| ||||||| | ||||| ||||| | || || || || |||| || ||||||||||| ||||||||||||||||||| |
|
|
| T |
2012006 |
cttgaactatggtcaag-agatccctgccatggagtggtacgcagcccggtactttgataggctctgggagatctctgtactcacatg |
2012092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 65 - 174
Target Start/End: Original strand, 2004843 - 2004952
Alignment:
| Q |
65 |
ggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggacccttttcaatttccaggaagctattaattag |
164 |
Q |
| |
|
|||| ||||||||||||| ||||||| || |||||||||||||||| ||| ||||||| |||||||||| | || ||||| ||||||||||||| || |
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|
| T |
2004843 |
ggatgatgggtccaacaggatacacaggagggttttcacttccttcatctttcattgcacttataggacccatctccatttctaggaagctattaacaag |
2004942 |
T |
|
| Q |
165 |
aacaccatca |
174 |
Q |
| |
|
|||||||||| |
|
|
| T |
2004943 |
aacaccatca |
2004952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 33 - 326
Target Start/End: Complemental strand, 1968824 - 1968531
Alignment:
| Q |
33 |
attagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctatagga |
132 |
Q |
| |
|
||||||||||||||| || ||||| |||||||||||| |||||||||| |||||| || |||| |||||||| || ||| ||||||| |||||| |
|
|
| T |
1968824 |
attagcatcatcacctgaacttgtttctgtttggataattggtccaacaggatacactggagggttgtcacttccctcctctttcattgcacttataggt |
1968725 |
T |
|
| Q |
133 |
cccttttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctat |
232 |
Q |
| |
|
||| | || | ||||||||||||||||| | |||||||||| || || || || || | | |||| ||| |||||| |||||||||||||| |
|
|
| T |
1968724 |
cccatctccaattccaggaagctattaacaaaaacaccatcagcaaaacttaaaagtttaaaaagtgggaggaagtgtttgtaaacttgacttgatctat |
1968625 |
T |
|
| Q |
233 |
cttgagcta-ggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttc |
326 |
Q |
| |
|
||||||||| | ||||| | ||||| ||||| || || ||||| |||||||||| ||||||||||| | |||||| ||||||||||| ||||| |
|
|
| T |
1968624 |
cttgagctacgctcaag-agatccctgccatggattggtacacagcctggtatttttataggctctggtatatctctatactcacatgatgtttc |
1968531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 70 - 174
Target Start/End: Complemental strand, 1964851 - 1964747
Alignment:
| Q |
70 |
atgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggacccttttcaatttccaggaagctattaattagaacac |
169 |
Q |
| |
|
||||||||||||| ||||||| | |||| |||||||||| |||||| ||||| |||||| ||| |||| ||||| | ||||||||||| ||||||| |
|
|
| T |
1964851 |
atgggtccaacaggatacacagaagggttgccacttccttcctctgtcggtgcttttataggtcccatttccatttctaagaagctattaacaagaacac |
1964752 |
T |
|
| Q |
170 |
catca |
174 |
Q |
| |
|
||||| |
|
|
| T |
1964751 |
catca |
1964747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 60 - 326
Target Start/End: Complemental strand, 5902376 - 5902110
Alignment:
| Q |
60 |
tgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggacccttttcaatttccaggaagctatta |
159 |
Q |
| |
|
|||||||||||||||||||| || |||||| | |||| |||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5902376 |
tgtttggataatgggtccaatagggtacacagcagggttaccacttccttcttctgtcagtgcttctataggacctttttcaatttccaggaagctatta |
5902277 |
T |
|
| Q |
160 |
attagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttgagctaggtcaagaaaatcccgac |
259 |
Q |
| |
|
|| || | ||||||| | || |||| ||| || || |||||| ||||| ||||||||||| || ||||||||||||||| || ||| | |||||||| |
|
|
| T |
5902276 |
ataagtatgccatcaacagaacagaatcttttaatacgttggagtaagaatttgtaagattggctcgatctatcttgagcttgggcaacgagatcccgac |
5902177 |
T |
|
| Q |
260 |
catgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttc |
326 |
Q |
| |
|
|| |||| || |||||||||||| ||||||||| ||||| |||||||||||||||||||| ||||| |
|
|
| T |
5902176 |
cacgaattggtacacaacctggtgcttgaataggttctggcagatctctgtactcacatgatgtttc |
5902110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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