View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13808_high_26 (Length: 339)

Name: NF13808_high_26
Description: NF13808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13808_high_26
NF13808_high_26
[»] chr6 (28 HSPs)
chr6 (12-319)||(26625447-26625754)
chr6 (12-319)||(26731424-26731731)
chr6 (12-243)||(31286753-31286984)
chr6 (12-230)||(27681161-27681379)
chr6 (12-162)||(26648659-26648809)
chr6 (12-162)||(26754627-26754777)
chr6 (12-230)||(27608885-27609103)
chr6 (30-162)||(27590816-27590948)
chr6 (12-162)||(27696424-27696574)
chr6 (30-228)||(27675347-27675545)
chr6 (14-162)||(27704050-27704198)
chr6 (14-95)||(27716400-27716481)
chr6 (13-162)||(26804694-26804843)
chr6 (262-302)||(27590547-27590587)
chr6 (28-95)||(26658172-26658239)
chr6 (28-95)||(26764143-26764210)
chr6 (263-302)||(27675141-27675180)
chr6 (262-304)||(27703782-27703824)
chr6 (262-304)||(27716065-27716107)
chr6 (262-302)||(28788941-28788981)
chr6 (14-129)||(27602589-27602704)
chr6 (262-304)||(27608685-27608727)
chr6 (262-304)||(27696156-27696198)
chr6 (262-296)||(31287132-31287166)
chr6 (14-159)||(26637735-26637880)
chr6 (14-159)||(26743701-26743846)
chr6 (262-302)||(27602290-27602330)
chr6 (262-302)||(28794965-28795005)
[»] scaffold0349 (2 HSPs)
scaffold0349 (14-95)||(15464-15545)
scaffold0349 (262-304)||(15838-15880)
[»] chr8 (2 HSPs)
chr8 (14-228)||(29271606-29271820)
chr8 (262-304)||(29271404-29271446)
[»] chr4 (10 HSPs)
chr4 (264-304)||(18682329-18682369)
chr4 (264-304)||(18726605-18726645)
chr4 (14-213)||(18721892-18722091)
chr4 (14-162)||(18677429-18677577)
chr4 (14-162)||(18729365-18729513)
chr4 (264-302)||(18653090-18653128)
chr4 (264-302)||(18721686-18721724)
chr4 (264-302)||(18729108-18729146)
chr4 (14-162)||(18653347-18653495)
chr4 (264-304)||(18677170-18677210)
[»] scaffold0419 (2 HSPs)
scaffold0419 (262-302)||(10091-10131)
scaffold0419 (40-162)||(9740-9862)
[»] scaffold0277 (3 HSPs)
scaffold0277 (262-302)||(2255-2295)
scaffold0277 (262-302)||(11218-11258)
scaffold0277 (40-162)||(2524-2646)
[»] scaffold1870 (1 HSPs)
scaffold1870 (40-162)||(1021-1143)
[»] chr1 (1 HSPs)
chr1 (40-162)||(28125526-28125648)


Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-169; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 12 - 319
Target Start/End: Original strand, 26625447 - 26625754
Alignment:
Q  12 gaatatgaaagtattaacattggacgaatgtgaacatttaacacatatacccgatatctcaggcctttcaaatttacaaaagttgacatttaatttttgt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26625447 gaatatgaaagtattaacattggacgaatgtgaacatttaacacatatacccgatatctcaggcctttcaaatttacaaaagttgacatttaatttttgt 26625546  T
Q  112 aaaaatttaattacaattgatgactcaattgggcaccgaaataaacttgaactagtaagtgcatcctgttgcaaaaagctcgagaactttccacccttat 211  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26625547 aaaaatttaattacaattgatgactcaattgggcacctaaataaacttgaactagtaagtgcatcctgttgcaaaaagctcgagaactttccacccttat 26625646  T
Q  212 ggttggtatctcttaagaatttggaactctctctccacccttgtgtttcgggaatgctgaggttcccaaaacataatgataaaatgtattcaaatgtgat 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  26625647 ggttggtatctcttaagaatttggaactctctctccacccttgtgtttcgggaatgctgaggttcccaaaacataatgataaaatgtattcaaatgtgac 26625746  T
Q  312 agagcttt 319  Q
    ||||||||    
T  26625747 agagcttt 26625754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 12 - 319
Target Start/End: Original strand, 26731424 - 26731731
Alignment:
Q  12 gaatatgaaagtattaacattggacgaatgtgaacatttaacacatatacccgatatctcaggcctttcaaatttacaaaagttgacatttaatttttgt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26731424 gaatatgaaagtattaacattggacgaatgtgaacatttaacacatatacccgatatctcaggcctttcaaatttacaaaagttgacatttaatttttgt 26731523  T
Q  112 aaaaatttaattacaattgatgactcaattgggcaccgaaataaacttgaactagtaagtgcatcctgttgcaaaaagctcgagaactttccacccttat 211  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26731524 aaaaatttaattacaattgatgactcaattgggcacctaaataaacttgaactagtaagtgcatcctgttgcaaaaagctcgagaactttccacccttat 26731623  T
Q  212 ggttggtatctcttaagaatttggaactctctctccacccttgtgtttcgggaatgctgaggttcccaaaacataatgataaaatgtattcaaatgtgat 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  26731624 ggttggtatctcttaagaatttggaactctctctccacccttgtgtttcgggaatgctgaggttcccaaaacataatgataaaatgtattcaaatgtgac 26731723  T
Q  312 agagcttt 319  Q
    ||||||||    
T  26731724 agagcttt 26731731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 12 - 243
Target Start/End: Original strand, 31286753 - 31286984
Alignment:
Q  12 gaatatgaaagtattaacattggacgaatgtgaacatttaacacatatacccgatatctcaggcctttcaaatttacaaaagttgacatttaatttttgt 111  Q
    |||||||||||| || ||||||||||| |||||| |||||||||||||||| ||| ||||||| ||||||||| || | |||||  ||||||| ||||||    
T  31286753 gaatatgaaagtcttgacattggacgattgtgaatatttaacacatatacctgatgtctcaggtctttcaaatatagagaagttctcatttaaattttgt 31286852  T
Q  112 aaaaatttaattacaattgatgactcaattgggcaccgaaataaacttgaactagtaagtgcatcctgttgcaaaaagctcgagaactttccacccttat 211  Q
    | |||||||||||||||||| || |||||||| |||| ||||||||||||| |  ||||||||    ||||||  |||||| ||   ||||||||||||     
T  31286853 agaaatttaattacaattgacgattcaattggccaccaaaataaacttgaattcataagtgcaattggttgcagcaagctcaagcgttttccacccttag 31286952  T
Q  212 ggttggtatctcttaagaatttggaactctct 243  Q
    | |||| |||||||||| | ||||||||||||    
T  31286953 gtttggcatctcttaaggaattggaactctct 31286984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 27681161 - 27681379
Alignment:
Q  12 gaatatgaaagtattaacattggacgaatgtgaacatttaacacatatacccgatatctcaggcctttcaaatttacaaaagttgacatttaatttttgt 111  Q
    |||||||||||| || ||||||||| | |||||| |||||||||||||||||||| |||||||||||||||||||| |||||||  | ||||  | ||||    
T  27681161 gaatatgaaagtcttgacattggactattgtgaatatttaacacatatacccgatgtctcaggcctttcaaatttagaaaagttatcgtttacatgttgt 27681260  T
Q  112 aaaaatttaattacaattgatgactcaattgggcaccgaaataaacttgaactagtaagtgcatcctgttgcaaaaagctcgagaactttccacccttat 211  Q
     | ||||||||||||||| |  | || ||||| |||| |||||||||||||    |||||||||   |||||| |||||||||  | |||| ||| |||     
T  27681261 gataatttaattacaattcacaattctattggacacctaaataaacttgaatggttaagtgcatatggttgcagaaagctcgaacattttcgacctttag 27681360  T
Q  212 ggttggtatctcttaagaa 230  Q
    |||||| ||||||||||||    
T  27681361 ggttggcatctcttaagaa 27681379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 162
Target Start/End: Original strand, 26648659 - 26648809
Alignment:
Q  12 gaatatgaaagtattaacattggacgaatgtgaacatttaacacatatacccgatatctcaggcctttcaaatttacaaaagttgacatttaatttttgt 111  Q
    |||||||||||| || |||||| ||   |||||| ||||||| |||||||| ||| ||||||  |||  ||||||| |||||||  ||||||  ||||||    
T  26648659 gaatatgaaagtcttgacattgaactgttgtgaatatttaactcatatacctgatgtctcagatcttcaaaatttagaaaagttctcatttatgttttgt 26648758  T
Q  112 aaaaatttaattacaattgatgactcaattgggcaccgaaataaacttgaa 162  Q
    || ||||||||||||||||| |||||||||||||||| |||||||||||||    
T  26648759 aagaatttaattacaattgacgactcaattgggcacctaaataaacttgaa 26648809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 162
Target Start/End: Original strand, 26754627 - 26754777
Alignment:
Q  12 gaatatgaaagtattaacattggacgaatgtgaacatttaacacatatacccgatatctcaggcctttcaaatttacaaaagttgacatttaatttttgt 111  Q
    |||||||||||| || |||||| ||   |||||| ||||||| |||||||| ||| ||||||  |||  ||||||| |||||||  ||||||  ||||||    
T  26754627 gaatatgaaagtcttgacattgaactgttgtgaatatttaactcatatacctgatgtctcagatcttcaaaatttagaaaagttctcatttatgttttgt 26754726  T
Q  112 aaaaatttaattacaattgatgactcaattgggcaccgaaataaacttgaa 162  Q
    || ||||||||||||||||| |||||||||||||||| |||||||||||||    
T  26754727 aagaatttaattacaattgacgactcaattgggcacctaaataaacttgaa 26754777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 230
Target Start/End: Complemental strand, 27609103 - 27608885
Alignment:
Q  12 gaatatgaaagtattaacattggacgaatgtgaacatttaacacatatacccgatatctcaggcctttcaaatttacaaaagttgacatttaatttttgt 111  Q
    |||||||||||| || |||||| || | |||||| |||||||||||||||||||| |||||||||||||||||||| |||||||  | ||||  | ||||    
T  27609103 gaatatgaaagtcttgacattgaactattgtgaatatttaacacatatacccgatgtctcaggcctttcaaatttagaaaagttatcgtttacatgttgt 27609004  T
Q  112 aaaaatttaattacaattgatgactcaattgggcaccgaaataaacttgaactagtaagtgcatcctgttgcaaaaagctcgagaactttccacccttat 211  Q
     | ||||||||||||||| |  | || ||||| |||| |||||||||||||    |||||||||   |||||| |||||||||    |||||||| |||     
T  27609003 gataatttaattacaattcacaattctattggacacctaaataaacttgaatggttaagtgcatatggttgcagaaagctcgaacgttttccacctttag 27608904  T
Q  212 ggttggtatctcttaagaa 230  Q
    | |||| ||||||||||||    
T  27608903 gtttggcatctcttaagaa 27608885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 30 - 162
Target Start/End: Complemental strand, 27590948 - 27590816
Alignment:
Q  30 attggacgaatgtgaacatttaacacatatacccgatatctcaggcctttcaaatttacaaaagttgacatttaatttttgtaaaaatttaattacaatt 129  Q
    ||||||| | |||||| |||||||||||||||||||| ||||||| |||||||||||| |||||||  ||||| | | |||||| |||||||||||||||    
T  27590948 attggaccattgtgaatatttaacacatatacccgatgtctcagggctttcaaatttagaaaagttatcatttgaatattgtaagaatttaattacaatt 27590849  T
Q  130 gatgactcaattgggcaccgaaataaacttgaa 162  Q
     |  | || ||||| |||| |||||||||||||    
T  27590848 cacaattcgattggacacctaaataaacttgaa 27590816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 162
Target Start/End: Complemental strand, 27696574 - 27696424
Alignment:
Q  12 gaatatgaaagtattaacattggacgaatgtgaacatttaacacatatacccgatatctcaggcctttcaaatttacaaaagttgacatttaatttttgt 111  Q
    |||||||||| | || ||||||||||| |||||| |||||||||||||||||||| ||||| |||||||||||||| |||||||  | ||| |   ||||    
T  27696574 gaatatgaaaatcttgacattggacgattgtgaatatttaacacatatacccgatgtctcaagcctttcaaatttagaaaagttatcgtttgaacattgt 27696475  T
Q  112 aaaaatttaattacaattgatgactcaattgggcaccgaaataaacttgaa 162  Q
    || ||||||||||||||| |  | || ||||| |||| || ||||||||||    
T  27696474 aagaatttaattacaattcacaattcgattggacacctaagtaaacttgaa 27696424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 228
Target Start/End: Complemental strand, 27675545 - 27675347
Alignment:
Q  30 attggacgaatgtgaacatttaacacatatacccgatatctcaggcctttcaaatttacaaaagttgacatttaatttttgtaaaaatttaattacaatt 129  Q
    ||||||| | |||||| |||||||||||||||||||| |||||||||||||||||||| |||||||  | ||| | | |||| | |||||||||||||||    
T  27675545 attggaccattgtgaatatttaacacatatacccgatgtctcaggcctttcaaatttagaaaagttatcgtttgaatgttgttataatttaattacaatt 27675446  T
Q  130 gatgactcaattgggcaccgaaataaacttgaactagtaagtgcatcctgttgcaaaaagctcgagaactttccacccttatggttggtatctcttaag 228  Q
     |  | || ||||| |||| ||| |||||||||    |||||||||   |||||| ||||||| |    |||||||| ||| |||||| ||||||||||    
T  27675445 cacaattcgattggacacctaaacaaacttgaaaggttaagtgcatttggttgcagaaagctcaaacgttttccacctttagggttggcatctcttaag 27675347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 14 - 162
Target Start/End: Complemental strand, 27704198 - 27704050
Alignment:
Q  14 atatgaaagtattaacattggacgaatgtgaacatttaacacatatacccgatatctcaggcctttcaaatttacaaaagttgacatttaatttttgtaa 113  Q
    |||||| ||| || ||||||||| | ||| || |||||||||||||||||||| |||||||||||||||||||| |||||||  | ||| | | |||| |    
T  27704198 atatgacagtcttgacattggaccattgtaaatatttaacacatatacccgatgtctcaggcctttcaaatttagaaaagttatcgtttgaatattgtga 27704099  T
Q  114 aaatttaattacaattgatgactcaattgggcaccgaaataaacttgaa 162  Q
     ||||||||||| ||| |  | || ||||| |||| |||||||||||||    
T  27704098 taatttaattacgattcacaattcgattggccacctaaataaacttgaa 27704050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 27716481 - 27716400
Alignment:
Q  14 atatgaaagtattaacattggacgaatgtgaacatttaacacatatacccgatatctcaggcctttcaaatttacaaaagtt 95  Q
    |||||||||| || | |||||||  |||| || |||||||||||||||||||| |||||||||||||||||||| |||||||    
T  27716481 atatgaaagtcttgatattggaccgatgtaaatatttaacacatatacccgatgtctcaggcctttcaaatttagaaaagtt 27716400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 13 - 162
Target Start/End: Original strand, 26804694 - 26804843
Alignment:
Q  13 aatatgaaagtattaacattggacgaatgtgaacatttaacacatatacccgatatctcaggcctttcaaatttacaaaagttgacatttaatttttgta 112  Q
    ||||||||||| || |||||||||||   |||| ||||||| || ||||| ||| ||||||| |||  ||||||| |||||||  | ||||| | ||||     
T  26804694 aatatgaaagtcttgacattggacgataatgaatatttaacccacatacctgatctctcaggtcttcaaaatttagaaaagttctcgtttaaatattgtg 26804793  T
Q  113 aaaatttaattacaattgatgactcaattgggcaccgaaataaacttgaa 162  Q
    | |||||||||||||||||  | || ||||| |||| |||||||||||||    
T  26804794 agaatttaattacaattgacaattcgattggacacctaaataaacttgaa 26804843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 262 - 302
Target Start/End: Complemental strand, 27590587 - 27590547
Alignment:
Q  262 ggaatgctgaggttcccaaaacataatgataaaatgtattc 302  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  27590587 ggaatgctgaggttcccaaaacataatgatagaatgtattc 27590547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 26658172 - 26658239
Alignment:
Q  28 acattggacgaatgtgaacatttaacacatatacccgatatctcaggcctttcaaatttacaaaagtt 95  Q
    ||||||||||| |||||| ||||||| ||||||||| || ||||||| || ||||||||| |||||||    
T  26658172 acattggacgattgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagtt 26658239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 26764143 - 26764210
Alignment:
Q  28 acattggacgaatgtgaacatttaacacatatacccgatatctcaggcctttcaaatttacaaaagtt 95  Q
    ||||||||||| |||||| ||||||| ||||||||| || ||||||| || ||||||||| |||||||    
T  26764143 acattggacgattgtgaatatttaacccatatacccaatgtctcaggtctctcaaatttagaaaagtt 26764210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 302
Target Start/End: Complemental strand, 27675180 - 27675141
Alignment:
Q  263 gaatgctgaggttcccaaaacataatgataaaatgtattc 302  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  27675180 gaatgctgaggttcccaaaacataatgatagaatgtattc 27675141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 304
Target Start/End: Complemental strand, 27703824 - 27703782
Alignment:
Q  262 ggaatgctgaggttcccaaaacataatgataaaatgtattcaa 304  Q
    ||||||||||||||||||||||| |||||||| ||||||||||    
T  27703824 ggaatgctgaggttcccaaaacagaatgataagatgtattcaa 27703782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 304
Target Start/End: Complemental strand, 27716107 - 27716065
Alignment:
Q  262 ggaatgctgaggttcccaaaacataatgataaaatgtattcaa 304  Q
    ||||||||||||||||||||||| |||||||| ||||||||||    
T  27716107 ggaatgctgaggttcccaaaacagaatgataagatgtattcaa 27716065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 302
Target Start/End: Original strand, 28788941 - 28788981
Alignment:
Q  262 ggaatgctgaggttcccaaaacataatgataaaatgtattc 302  Q
    ||||||||||||||||||||||| |||||| ||||||||||    
T  28788941 ggaatgctgaggttcccaaaacagaatgatcaaatgtattc 28788981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 129
Target Start/End: Complemental strand, 27602704 - 27602589
Alignment:
Q  14 atatgaaagtattaacattggacgaatgtgaacatttaacacatatacccgatatctcaggcctttcaaatttacaaaagttgacatttaatttttgtaa 113  Q
    ||||||||||||| | |||| ||   ||| || ||||||| || ||||||||| ||||||| ||| |||||||| |||||||  | ||| | |||||| |    
T  27602704 atatgaaagtattgaaattgaacagttgtcaatatttaacccaaatacccgatgtctcaggacttccaaatttagaaaagttatcgtttcaattttgtga 27602605  T
Q  114 aaatttaattacaatt 129  Q
     |||||||||||||||    
T  27602604 gaatttaattacaatt 27602589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 304
Target Start/End: Complemental strand, 27608727 - 27608685
Alignment:
Q  262 ggaatgctgaggttcccaaaacataatgataaaatgtattcaa 304  Q
    |||| |||||||||||||||||| |||||||| ||||||||||    
T  27608727 ggaacgctgaggttcccaaaacagaatgataagatgtattcaa 27608685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 304
Target Start/End: Complemental strand, 27696198 - 27696156
Alignment:
Q  262 ggaatgctgaggttcccaaaacataatgataaaatgtattcaa 304  Q
    ||||| |||||||||||| ||||||||||||| ||||||||||    
T  27696198 ggaatcctgaggttcccagaacataatgataagatgtattcaa 27696156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 296
Target Start/End: Original strand, 31287132 - 31287166
Alignment:
Q  262 ggaatgctgaggttcccaaaacataatgataaaat 296  Q
    ||||||||||||||||||||||||||||| |||||    
T  31287132 ggaatgctgaggttcccaaaacataatgacaaaat 31287166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 159
Target Start/End: Original strand, 26637735 - 26637880
Alignment:
Q  14 atatgaaagtattaacattggacgaatgtgaacatttaacacatatacccgatatctcaggcctttcaaatttacaaaagttgacatttaatttttgtaa 113  Q
    |||||||||| || |||||| || | ||| |  ||||||| |||||||||||| ||||||| || ||||||||  |||||||  | |||||    |||||    
T  26637735 atatgaaagtcttgacattgaaccattgtcactatttaactcatatacccgatgtctcaggtctatcaaattttgaaaagttctcgtttaaaaagtgtaa 26637834  T
Q  114 aaatttaattacaattgatgactcaattgggcaccgaaataaactt 159  Q
    ||||| |||||||||| | || || |||||||| | || |||||||    
T  26637835 aaattgaattacaattcacgattcgattgggcagctaagtaaactt 26637880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 159
Target Start/End: Original strand, 26743701 - 26743846
Alignment:
Q  14 atatgaaagtattaacattggacgaatgtgaacatttaacacatatacccgatatctcaggcctttcaaatttacaaaagttgacatttaatttttgtaa 113  Q
    |||||||||| || |||||| || | ||| |  ||||||| |||||||||||| ||||||| || ||||||||  |||||||  | |||||    |||||    
T  26743701 atatgaaagtcttgacattgaaccattgtcactatttaactcatatacccgatgtctcaggtctatcaaattttgaaaagttctcgtttaaaaagtgtaa 26743800  T
Q  114 aaatttaattacaattgatgactcaattgggcaccgaaataaactt 159  Q
    ||||| |||||||||| | || || |||||||| | || |||||||    
T  26743801 aaattgaattacaattcacgattcgattgggcagctaagtaaactt 26743846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 302
Target Start/End: Complemental strand, 27602330 - 27602290
Alignment:
Q  262 ggaatgctgaggttcccaaaacataatgataaaatgtattc 302  Q
    |||||||| |||||||||||||| |||||||||||| ||||    
T  27602330 ggaatgctcaggttcccaaaacaaaatgataaaatgaattc 27602290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 302
Target Start/End: Original strand, 28794965 - 28795005
Alignment:
Q  262 ggaatgctgaggttcccaaaacataatgataaaatgtattc 302  Q
    |||||| |||||||||||||||| |||||| ||||||||||    
T  28794965 ggaatgatgaggttcccaaaacagaatgatcaaatgtattc 28795005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 15464 - 15545
Alignment:
Q  14 atatgaaagtattaacattggacgaatgtgaacatttaacacatatacccgatatctcaggcctttcaaatttacaaaagtt 95  Q
    |||||||||| || | |||||||  |||| || |||||||||||||||||||| |||||||||||||||||||| |||||||    
T  15464 atatgaaagtcttgatattggaccgatgtaaatatttaacacatatacccgatgtctcaggcctttcaaatttagaaaagtt 15545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 304
Target Start/End: Original strand, 15838 - 15880
Alignment:
Q  262 ggaatgctgaggttcccaaaacataatgataaaatgtattcaa 304  Q
    ||||||||||||||||||||||| |||||||| ||||||||||    
T  15838 ggaatgctgaggttcccaaaacagaatgataagatgtattcaa 15880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 228
Target Start/End: Complemental strand, 29271820 - 29271606
Alignment:
Q  14 atatgaaagtattaacattggacgaatgtgaacatttaacacatatacccgatatctcaggcctttcaaatttacaaaagttgacatttaatttttgtaa 113  Q
    |||||||||| || | |||||||  ||||||| | ||||||||||| |||||| |||||||||||||||||||| |||||||  | ||| |   |||| |    
T  29271820 atatgaaagtcttgatattggaccgatgtgaatacttaacacatatccccgatgtctcaggcctttcaaatttagaaaagttatcgtttgaaaattgtga 29271721  T
Q  114 aaatttaattacaattgatgactcaattgggcaccgaaataaacttgaactagtaagtgcatcctgttgcaaaaagctcgagaactttccacccttatgg 213  Q
     ||||||| ||||||| |  | || ||||| |||| |||||||||||||    |||||||||    ||||||||||||| |  | |||||||| ||| |     
T  29271720 taatttaactacaattcacaattcgattggacacctaaataaacttgaaaggttaagtgcatatgcttgcaaaaagctcaaacattttccacctttaggt 29271621  T
Q  214 ttggtatctcttaag 228  Q
    |||| ||||||||||    
T  29271620 ttggcatctcttaag 29271606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 304
Target Start/End: Complemental strand, 29271446 - 29271404
Alignment:
Q  262 ggaatgctgaggttcccaaaacataatgataaaatgtattcaa 304  Q
    ||||||||||| |||||||||||||||||||| ||||||||||    
T  29271446 ggaatgctgagcttcccaaaacataatgataagatgtattcaa 29271404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 18682369 - 18682329
Alignment:
Q  264 aatgctgaggttcccaaaacataatgataaaatgtattcaa 304  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  18682369 aatgctcaggttcccaaaacataatgataaaatgtattcaa 18682329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 18726645 - 18726605
Alignment:
Q  264 aatgctgaggttcccaaaacataatgataaaatgtattcaa 304  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  18726645 aatgctcaggttcccaaaacataatgataaaatgtattcaa 18726605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 213
Target Start/End: Complemental strand, 18722091 - 18721892
Alignment:
Q  14 atatgaaagtattaacattggacgaatgtgaacatttaacacatatacccgatatctcaggcctttcaaatttacaaaagttgacatttaatttttgtaa 113  Q
    |||||||||| || ||||||||| | ||| || ||||||| ||||||||| || ||||||| ||| |||||||| |||| ||  | |||   |||||| |    
T  18722091 atatgaaagtcttgacattggacaagtgtcaatatttaacccatatacccaatgtctcaggtcttccaaatttagaaaaattctcgtttcgattttgtga 18721992  T
Q  114 aaatttaattacaattgatgactcaattgggcaccgaaataaacttgaactagtaagtgcatcctgttgcaaaaagctcgagaactttccacccttatgg 213  Q
     ||||||||| || || | || || |||||| ||| ||||||||||||| |  ||| ||||||  | ||||  ||||| ||||  |||||||||||||||    
T  18721991 taatttaattgcagttcacgattcgattgggaacctaaataaacttgaaatcttaaatgcatctggatgcatcaagcttgagagttttccacccttatgg 18721892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 162
Target Start/End: Complemental strand, 18677577 - 18677429
Alignment:
Q  14 atatgaaagtattaacattggacgaatgtgaacatttaacacatatacccgatatctcaggcctttcaaatttacaaaagttgacatttaatttttgtaa 113  Q
    |||||||||| || ||||||||| | |||  | ||||||| ||||||||| || ||||||| ||| |||||||| |||| ||  | |||   |||||| |    
T  18677577 atatgaaagtcttgacattggactattgtctatatttaacccatatacccaatgtctcaggtcttccaaatttagaaaaattctcgtttcgattttgtga 18677478  T
Q  114 aaatttaattacaattgatgactcaattgggcaccgaaataaacttgaa 162  Q
     ||||||||| ||||| | || || |||||| ||| |||||||||||||    
T  18677477 taatttaattgcaattcacgattcgattgggaacctaaataaacttgaa 18677429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 162
Target Start/End: Complemental strand, 18729513 - 18729365
Alignment:
Q  14 atatgaaagtattaacattggacgaatgtgaacatttaacacatatacccgatatctcaggcctttcaaatttacaaaagttgacatttaatttttgtaa 113  Q
    |||||||||| || ||||||||| | ||| || ||||||| ||||||||| || ||||||| ||| |||||||| |||| ||  | ||| | | |||| |    
T  18729513 atatgaaagtcttgacattggacaagtgtcaatatttaacccatatacccaatgtctcaggtcttccaaatttagaaaaattctcgtttcaatattgtga 18729414  T
Q  114 aaatttaattacaattgatgactcaattgggcaccgaaataaacttgaa 162  Q
     ||||||||| ||||| | || || |||||| | | |||||||||||||    
T  18729413 caatttaattgcaattcacgattcgattgggaagctaaataaacttgaa 18729365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 302
Target Start/End: Complemental strand, 18653128 - 18653090
Alignment:
Q  264 aatgctgaggttcccaaaacataatgataaaatgtattc 302  Q
    |||||| |||||||||||||||||||| |||||||||||    
T  18653128 aatgctcaggttcccaaaacataatgagaaaatgtattc 18653090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 302
Target Start/End: Complemental strand, 18721724 - 18721686
Alignment:
Q  264 aatgctgaggttcccaaaacataatgataaaatgtattc 302  Q
    |||||| |||||||||||||||||||| |||||||||||    
T  18721724 aatgctcaggttcccaaaacataatgagaaaatgtattc 18721686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 302
Target Start/End: Complemental strand, 18729146 - 18729108
Alignment:
Q  264 aatgctgaggttcccaaaacataatgataaaatgtattc 302  Q
    |||||| |||||||||||||||||||| |||||||||||    
T  18729146 aatgctcaggttcccaaaacataatgagaaaatgtattc 18729108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 162
Target Start/End: Complemental strand, 18653495 - 18653347
Alignment:
Q  14 atatgaaagtattaacattggacgaatgtgaacatttaacacatatacccgatatctcaggcctttcaaatttacaaaagttgacatttaatttttgtaa 113  Q
    |||||||||| || ||||||||| | ||| || ||||||| ||||||||| || ||| ||| ||| | |||||| || | ||  | ||| | |||||||     
T  18653495 atatgaaagtcttgacattggacaattgtcaatatttaacccatatacccaatgtcttaggtcttcctaatttagaataattctcgtttcaattttgtat 18653396  T
Q  114 aaatttaattacaattgatgactcaattgggcaccgaaataaacttgaa 162  Q
     ||||||||| ||||| | || || |||||| ||| |||||||||||||    
T  18653395 taatttaattgcaattcacgattcgattgggaacctaaataaacttgaa 18653347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 18677210 - 18677170
Alignment:
Q  264 aatgctgaggttcccaaaacataatgataaaatgtattcaa 304  Q
    |||||| |||||| ||||||||||||| |||||||||||||    
T  18677210 aatgctcaggttcacaaaacataatgagaaaatgtattcaa 18677170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 302
Target Start/End: Original strand, 10091 - 10131
Alignment:
Q  262 ggaatgctgaggttcccaaaacataatgataaaatgtattc 302  Q
    ||||||||||||||||||||||| |||||| ||||||||||    
T  10091 ggaatgctgaggttcccaaaacagaatgatcaaatgtattc 10131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 162
Target Start/End: Original strand, 9740 - 9862
Alignment:
Q  40 tgtgaacatttaacacatatacccgatatctcaggcctttcaaatttacaaaagttgacatttaatttttgtaaaaatttaattacaattgatgactcaa 139  Q
    |||||| ||||||| |||||||| ||| ||||||| |||  ||||||| |||||||  | ||| | | |||| | ||||||||||||||| |  | ||||    
T  9740 tgtgaatatttaacccatatacctgatgtctcaggtcttcaaaatttagaaaagttctcctttgaatattgtgagaatttaattacaattcacaattcaa 9839  T
Q  140 ttgggcaccgaaataaacttgaa 162  Q
    |||| ||||  ||||||||||||    
T  9840 ttggacacctcaataaacttgaa 9862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 302
Target Start/End: Complemental strand, 2295 - 2255
Alignment:
Q  262 ggaatgctgaggttcccaaaacataatgataaaatgtattc 302  Q
    ||||||||||||||||||||||| |||||| ||||||||||    
T  2295 ggaatgctgaggttcccaaaacagaatgatcaaatgtattc 2255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 302
Target Start/End: Complemental strand, 11258 - 11218
Alignment:
Q  262 ggaatgctgaggttcccaaaacataatgataaaatgtattc 302  Q
    ||||||||||||||||||||||| |||||| ||||||||||    
T  11258 ggaatgctgaggttcccaaaacagaatgatcaaatgtattc 11218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 162
Target Start/End: Complemental strand, 2646 - 2524
Alignment:
Q  40 tgtgaacatttaacacatatacccgatatctcaggcctttcaaatttacaaaagttgacatttaatttttgtaaaaatttaattacaattgatgactcaa 139  Q
    |||||| ||||||| |||||||| ||| ||||||| |||  ||||||| |||||||  | ||| | | |||| | ||||||||||||||| |  | ||||    
T  2646 tgtgaatatttaacccatatacctgatgtctcaggtcttcaaaatttagaaaagttctcctttgaatattgtgagaatttaattacaattcacaattcaa 2547  T
Q  140 ttgggcaccgaaataaacttgaa 162  Q
    |||| ||||  ||||||||||||    
T  2546 ttggacacctcaataaacttgaa 2524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1870 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 162
Target Start/End: Original strand, 1021 - 1143
Alignment:
Q  40 tgtgaacatttaacacatatacccgatatctcaggcctttcaaatttacaaaagttgacatttaatttttgtaaaaatttaattacaattgatgactcaa 139  Q
    |||||| ||||||| |||||||| ||| ||||||| |||  ||||||| |||||||  | ||| | | |||| | ||||||||||||||| |  | ||||    
T  1021 tgtgaatatttaacccatatacctgatgtctcaggtcttcaaaatttagaaaagttctcctttgaatattgtgagaatttaattacaattcacaattcaa 1120  T
Q  140 ttgggcaccgaaataaacttgaa 162  Q
    |||| ||||  ||||||||||||    
T  1121 ttggacacctcaataaacttgaa 1143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 162
Target Start/End: Complemental strand, 28125648 - 28125526
Alignment:
Q  40 tgtgaacatttaacacatatacccgatatctcaggcctttcaaatttacaaaagttgacatttaatttttgtaaaaatttaattacaattgatgactcaa 139  Q
    |||||| ||||||| |||||||||||| |||||   ||| |||||||| |||||||  |||||   | |||| | ||||||||||||||| |  | || |    
T  28125648 tgtgaatatttaacccatatacccgatgtctcacatcttccaaatttagaaaagttctcatttgcatattgtgataatttaattacaattcacaattcga 28125549  T
Q  140 ttgggcaccgaaataaacttgaa 162  Q
    ||||| ||| |||||||||||||    
T  28125548 ttgggtacctaaataaacttgaa 28125526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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