View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13808_high_27 (Length: 332)
Name: NF13808_high_27
Description: NF13808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13808_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 27694066 - 27694222
Alignment:
| Q |
1 |
aacttgagcatcatggtatccccatatatggggtgtacatttatcattactctacaagaaataaacaggtaccaataattttatcaaatttataaagttt |
100 |
Q |
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| T |
27694066 |
aacttgagcatcatggtatccccata-atggggcgtacatttatcattactctacaagaaataaacaggtaccaataattttatcaaatttataaagttt |
27694164 |
T |
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| Q |
101 |
gaacttcaacttcaacatgatcacaatcacaagagccaaaaattgatggcctggctcc |
158 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27694165 |
gaacttgaacttcaacatgatcacaatcacaagagccaaaaattgatggcctggctcc |
27694222 |
T |
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Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 224 - 312
Target Start/End: Original strand, 27694218 - 27694306
Alignment:
| Q |
224 |
gctccatcagtagtttacaaccagtctccagaaaaatgactcaacaaagggaaaggcttcgatcctatttcatcacacaacattgcctt |
312 |
Q |
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| T |
27694218 |
gctccatcagtagtttacaaccagtctccagaaaaatgactcaacgaagggaaaggcttcgaccctatttcatcacacaacattgcctt |
27694306 |
T |
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