View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13808_high_30 (Length: 324)

Name: NF13808_high_30
Description: NF13808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13808_high_30
NF13808_high_30
[»] chr2 (2 HSPs)
chr2 (112-309)||(33501066-33501263)
chr2 (7-116)||(33501290-33501399)
[»] chr4 (1 HSPs)
chr4 (116-161)||(35043107-35043152)
[»] chr1 (2 HSPs)
chr1 (113-209)||(3463597-3463695)
chr1 (116-161)||(39003223-39003268)
[»] chr8 (1 HSPs)
chr8 (132-221)||(15663498-15663589)


Alignment Details
Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 112 - 309
Target Start/End: Complemental strand, 33501263 - 33501066
Alignment:
Q  112 gtgtggaaattaatcgtatattgagggtgacgcggagtcacccttatatacgtgaaagtggtgttaacagcttccgaaatgtggcgcctcatcagggggc 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| | ||||| ||||||||||    
T  33501263 gtgtggaaattaatcgtatattgagggtgacgcggagtcacccttatatacgtgaaagcggtgttaacagctttcgaaatgcgacgccttatcagggggc 33501164  T
Q  212 cattgaaggccacgtgtgcgacgaaagagagacaaggacgtgttccaagaagatgatccatactggaactagtgtgcttcctcaacggtgtgccctat 309  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  33501163 cattggaggccacgtgtgcgacgaaagagaggcaaggacgtgttccaagaagatgatccatactggaactaatgtgcttcctcaacgttgtgccctat 33501066  T

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Target: chr2; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 7 - 116
Target Start/End: Complemental strand, 33501399 - 33501290
Alignment:
Q  7 cataggggcaacgatcgcgtgcggtgttctggcacggtggcgatttagtcttcacaacggagtgaaaggtgtttgcaagcatattagcctccaacgtcca 106  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||  ||||| ||||||||||||||| ||||    
T  33501399 catagaggcaacgatcgcgtgctgtgttctggcacggtggcgatttagtcttcacaacggagcaaaaggtgtccgcaagtatattagcctccaacatcca 33501300  T
Q  107 agtgagtgtg 116  Q
    ||| ||||||    
T  33501299 agttagtgtg 33501290  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 161
Target Start/End: Complemental strand, 35043152 - 35043107
Alignment:
Q  116 ggaaattaatcgtatattgagggtgacgcggagtcacccttatata 161  Q
    |||||| ||||||| ||||||||||||||||||||||| |||||||    
T  35043152 ggaaatgaatcgtacattgagggtgacgcggagtcaccattatata 35043107  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 209
Target Start/End: Complemental strand, 3463695 - 3463597
Alignment:
Q  113 tgtggaaattaatcgtatattgagggtgacgcggagtcacccttatatacgtgaaagtggtgttaacagcttccg--aaatgtggcgcctcatcagggg 209  Q
    |||| |||| |||||||| |||||||||||   |||||||||||||||| | ||| | || | |||| |||||||  ||||||||| ||||||||||||    
T  3463695 tgtgaaaatgaatcgtattttgagggtgacaatgagtcacccttatataggcgaaggaggcgctaacggcttccgtaaaatgtggcacctcatcagggg 3463597  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 39003223 - 39003268
Alignment:
Q  116 ggaaattaatcgtatattgagggtgacgcggagtcacccttatata 161  Q
    ||||||||||||||  |||||||||| ||||| |||||||||||||    
T  39003223 ggaaattaatcgtaccttgagggtgatgcggaatcacccttatata 39003268  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 221
Target Start/End: Complemental strand, 15663589 - 15663498
Alignment:
Q  132 ttgagggtgacgcggagtcacccttatatacgtgaaagtggtgttaacagcttcc--gaaatgtggcgcctcatcagggggccattgaaggc 221  Q
    ||||||||||||  |||||| ||||||||| ||||||||| || ||||  |||||  ||||||  |||||||||||||| ||| ||| ||||    
T  15663589 ttgagggtgacgttgagtcatccttatataggtgaaagtgatgctaacgacttccgtgaaatgcagcgcctcatcagggagccgttggaggc 15663498  T

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