View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13808_high_32 (Length: 302)

Name: NF13808_high_32
Description: NF13808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13808_high_32
NF13808_high_32
[»] chr6 (11 HSPs)
chr6 (37-232)||(30817445-30817639)
chr6 (258-302)||(30817633-30817677)
chr6 (143-223)||(4420650-4420730)
chr6 (150-191)||(33832263-33832304)
chr6 (143-227)||(3155179-3155262)
chr6 (149-195)||(1019599-1019645)
chr6 (143-221)||(2117412-2117490)
chr6 (148-202)||(7785732-7785786)
chr6 (153-202)||(281841-281890)
chr6 (154-202)||(6536975-6537023)
chr6 (150-202)||(7945874-7945926)
[»] chr3 (7 HSPs)
chr3 (143-227)||(52412887-52412971)
chr3 (150-205)||(36200121-36200176)
chr3 (143-194)||(41452559-41452610)
chr3 (167-221)||(20170715-20170769)
chr3 (143-221)||(37273143-37273221)
chr3 (150-202)||(21574518-21574570)
chr3 (157-205)||(45432936-45432984)
[»] chr8 (8 HSPs)
chr8 (143-202)||(11183573-11183632)
chr8 (170-221)||(30918122-30918173)
chr8 (126-202)||(10722652-10722728)
chr8 (143-202)||(4558826-4558885)
chr8 (149-191)||(447095-447137)
chr8 (150-192)||(13410205-13410247)
chr8 (143-221)||(30259123-30259201)
chr8 (170-223)||(42215092-42215145)
[»] chr7 (5 HSPs)
chr7 (143-202)||(12234872-12234931)
chr7 (143-202)||(33645944-33646003)
chr7 (143-227)||(4966159-4966243)
chr7 (169-202)||(34754819-34754852)
chr7 (142-187)||(36537951-36537996)
[»] chr5 (14 HSPs)
chr5 (143-190)||(18286831-18286878)
chr5 (157-227)||(11707058-11707128)
chr5 (149-232)||(19460375-19460458)
chr5 (167-227)||(40590761-40590821)
chr5 (150-221)||(2568667-2568738)
chr5 (150-208)||(8089958-8090016)
chr5 (150-227)||(9106824-9106902)
chr5 (143-221)||(10272414-10272492)
chr5 (142-191)||(7674687-7674736)
chr5 (150-223)||(10125708-10125781)
chr5 (152-221)||(37526191-37526260)
chr5 (143-227)||(8481221-8481305)
chr5 (157-221)||(33533536-33533600)
chr5 (168-220)||(38104865-38104917)
[»] chr2 (13 HSPs)
chr2 (149-200)||(41809234-41809285)
chr2 (143-221)||(34652019-34652097)
chr2 (164-227)||(43259837-43259900)
chr2 (167-221)||(27288640-27288694)
chr2 (143-192)||(14316128-14316177)
chr2 (142-195)||(27237875-27237928)
chr2 (150-195)||(29643406-29643451)
chr2 (142-227)||(41032937-41033021)
chr2 (150-227)||(41817171-41817248)
chr2 (150-191)||(45314907-45314948)
chr2 (171-227)||(3078651-3078707)
chr2 (157-221)||(16867748-16867812)
chr2 (143-191)||(30538156-30538204)
[»] chr1 (15 HSPs)
chr1 (144-227)||(33722385-33722468)
chr1 (143-221)||(38867814-38867892)
chr1 (158-227)||(14629964-14630033)
chr1 (146-227)||(28482219-28482300)
chr1 (148-192)||(3223705-3223749)
chr1 (143-195)||(13037895-13037947)
chr1 (156-227)||(34290239-34290310)
chr1 (150-221)||(45205077-45205148)
chr1 (170-227)||(16322852-16322909)
chr1 (170-227)||(28262629-28262686)
chr1 (178-227)||(29385622-29385671)
chr1 (150-202)||(4699605-4699657)
chr1 (157-221)||(6932958-6933022)
chr1 (154-221)||(19389910-19389978)
chr1 (143-191)||(24153320-24153368)
[»] chr4 (10 HSPs)
chr4 (172-221)||(18628555-18628604)
chr4 (149-221)||(29263379-29263451)
chr4 (150-202)||(46110231-46110283)
chr4 (151-227)||(56186892-56186968)
chr4 (170-227)||(7694020-7694077)
chr4 (149-194)||(28232581-28232626)
chr4 (144-221)||(53673642-53673719)
chr4 (154-195)||(55547038-55547079)
chr4 (171-227)||(17975380-17975436)
chr4 (150-194)||(50471235-50471279)
[»] scaffold0153 (2 HSPs)
scaffold0153 (144-202)||(6478-6536)
scaffold0153 (144-202)||(13498-13556)


Alignment Details
Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 37 - 232
Target Start/End: Original strand, 30817445 - 30817639
Alignment:
Q  37 acattgtatggactttcttttcttgtaaagacaacaatgacatgattggatcgaccgatttgagcttagttactagcaaaataatttacgagattattgg 136  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  30817445 acattgtatggactttcttttcttgtaaagaaaacaatgacatgattggatcgaccgatttgagcttagttactagcaaaataatttacgagattatt-g 30817543  T
Q  137 ggaggacttatagaaacaacttatgatatatttataagttgtttttagcttatttccatcagctctacaagacaacttatgaaaatagctttaaac 232  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30817544 ggaggacttatagaaacaacttatgatatatttataagtggtttttagcttatttccatcagctctacaagacaacttatgaaaatagctttaaac 30817639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 258 - 302
Target Start/End: Original strand, 30817633 - 30817677
Alignment:
Q  258 tttaaacttatatggaaagaattaactttattttaccttttgtta 302  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  30817633 tttaaacttatatggaaagaattgactttattttaccttttgtta 30817677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 143 - 223
Target Start/End: Complemental strand, 4420730 - 4420650
Alignment:
Q  143 cttatagaaacaacttatgatatatttataagttgtttttagcttatttccatcagctctacaagacaacttatgaaaata 223  Q
    ||||||||||||| |||||| || || ||||| |||||| ||||||||||||| |||||| ||||| | |||| |||||||    
T  4420730 cttatagaaacaaattatgacatgttcataagctgttttcagcttatttccataagctctccaagatagcttaggaaaata 4420650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 33832263 - 33832304
Alignment:
Q  150 aaacaacttatgatatatttataagttgtttttagcttattt 191  Q
    ||||||||||||| || |||||||||||||||||||||||||    
T  33832263 aaacaacttatgacatgtttataagttgtttttagcttattt 33832304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 227
Target Start/End: Complemental strand, 3155262 - 3155179
Alignment:
Q  143 cttatagaaacaacttatgatatatttataagttgtttttagcttatttccatcagctctacaagacaacttatgaaaatagctt 227  Q
    |||||| | ||||||||||| || | |||||| |||||| ||||||||||||| |||||| || || | ||||||||||||||||    
T  3155262 cttatatacacaacttatgacatgtctataagctgttttcagcttatttccat-agctctccaggatatcttatgaaaatagctt 3155179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 195
Target Start/End: Original strand, 1019599 - 1019645
Alignment:
Q  149 gaaacaacttatgatatatttataagttgtttttagcttatttccat 195  Q
    |||||||||||| | || | |||||||||||||||||||||||||||    
T  1019599 gaaacaacttataacatgtctataagttgtttttagcttatttccat 1019645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 2117490 - 2117412
Alignment:
Q  143 cttatagaaacaacttatgatatatttataagttgtttttagcttatttccatcagctctacaagacaacttatgaaaa 221  Q
    ||||||||||||| |||||  || | |||||| ||||||||||||||||| || ||||||  | || ||||||||||||    
T  2117490 cttatagaaacaatttatggcatgtctataagctgtttttagcttatttcaataagctctctaggataacttatgaaaa 2117412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 202
Target Start/End: Original strand, 7785732 - 7785786
Alignment:
Q  148 agaaacaacttatgatatatttataagttgtttttagcttatttccatcagctct 202  Q
    ||||||| ||||||| || | ||||||||||||| ||||||||||||| ||||||    
T  7785732 agaaacagcttatgacatgtctataagttgttttcagcttatttccataagctct 7785786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 281841 - 281890
Alignment:
Q  153 caacttatgatatatttataagttgtttttagcttatttccatcagctct 202  Q
    |||||||||| || | ||||||||||||| ||||||||||||| ||||||    
T  281841 caacttatgacatgtctataagttgttttcagcttatttccatgagctct 281890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 6537023 - 6536975
Alignment:
Q  154 aacttatgatatatttataagttgtttttagcttatttccatcagctct 202  Q
    ||||||||| || || |||||||||||| ||||||||||||| ||||||    
T  6537023 aacttatgacatgttcataagttgttttcagcttatttccataagctct 6536975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 7945874 - 7945926
Alignment:
Q  150 aaacaacttatgatatatttataagttgtttttagcttatttccatcagctct 202  Q
    ||||||||||||  || ||||| ||||||||| ||||||||||||| ||||||    
T  7945874 aaacaacttatggcatgtttattagttgttttaagcttatttccataagctct 7945926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 143 - 227
Target Start/End: Original strand, 52412887 - 52412971
Alignment:
Q  143 cttatagaaacaacttatgatatatttataagttgtttttagcttatttccatcagctctacaagacaacttatgaaaatagctt 227  Q
    |||||||||||||| ||||| || |||||||| |||||| |||||||||||||  |||||  | |||||||||||||||||||||    
T  52412887 cttatagaaacaacctatgacatgtttataagctgttttcagcttatttccatatgctctctaggacaacttatgaaaatagctt 52412971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 205
Target Start/End: Complemental strand, 36200176 - 36200121
Alignment:
Q  150 aaacaacttatgatatatttataagttgtttttagcttatttccatcagctctaca 205  Q
    ||||||||||||| || |  |||||||||||| ||||||||||||| |||||||||    
T  36200176 aaacaacttatgacatgtccataagttgttttcagcttatttccatgagctctaca 36200121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 194
Target Start/End: Complemental strand, 41452610 - 41452559
Alignment:
Q  143 cttatagaaacaacttatgatatatttataagttgtttttagcttatttcca 194  Q
    ||||||||||||||||||||||| | |||||| |||||| | ||||||||||    
T  41452610 cttatagaaacaacttatgatatgtctataagctgttttcaccttatttcca 41452559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 20170715 - 20170769
Alignment:
Q  167 tttataagttgtttttagcttatttccatcagctctacaagacaacttatgaaaa 221  Q
    |||| |||||||||||||||||||| ||| |||||||||||| | |||| |||||    
T  20170715 tttaaaagttgtttttagcttatttgcataagctctacaagatagcttaggaaaa 20170769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 37273221 - 37273143
Alignment:
Q  143 cttatagaaacaacttatgatatatttataagttgtttttagcttatttccatcagctctacaagacaacttatgaaaa 221  Q
    ||||| |||||||||||||| || |  |||||||||||| | ||||||||||| || ||| ||||| | ||||||||||    
T  37273221 cttatggaaacaacttatgacatgtccataagttgttttcaacttatttccataagttctccaagatagcttatgaaaa 37273143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 21574570 - 21574518
Alignment:
Q  150 aaacaacttatgatatatttataagttgtttttagcttatttccatcagctct 202  Q
    ||||||||||||| || || ||||| || ||||||||||||||||| ||||||    
T  21574570 aaacaacttatgacatgttcataagctgcttttagcttatttccataagctct 21574518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 45432936 - 45432984
Alignment:
Q  157 ttatgatatatttataagttgtttttagcttatttccatcagctctaca 205  Q
    |||||| || || |||||||||||| ||||||||||||| |||||||||    
T  45432936 ttatgacatgttcataagttgttttcagcttatttccataagctctaca 45432984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 11183632 - 11183573
Alignment:
Q  143 cttatagaaacaacttatgatatatttataagttgtttttagcttatttccatcagctct 202  Q
    |||||| |||||||||||||||| | |||||| |||||| ||||||||||||| ||||||    
T  11183632 cttataaaaacaacttatgatatgtctataagctgttttcagcttatttccataagctct 11183573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 30918173 - 30918122
Alignment:
Q  170 ataagttgtttttagcttatttccatcagctctacaagacaacttatgaaaa 221  Q
    |||||||||||| ||||||||||||| |||||| ||||| ||||||||||||    
T  30918173 ataagttgttttcagcttatttccataagctctccaagaaaacttatgaaaa 30918122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 202
Target Start/End: Complemental strand, 10722728 - 10722652
Alignment:
Q  126 gagattattggggaggacttatagaaacaacttatgatatatttataagttgtttttagcttatttccatcagctct 202  Q
    |||||| || ||||| | |||| |||||| ||||||| || |  ||| |||||||||||||||||||||||||||||    
T  10722728 gagattgtttgggagaatttatggaaacagcttatgacatctccataggttgtttttagcttatttccatcagctct 10722652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 4558885 - 4558826
Alignment:
Q  143 cttatagaaacaacttatgatatatttataagttgtttttagcttatttccatcagctct 202  Q
    ||||| |||| |||||||||| | | |||||||||||||||| |||||||||| ||||||    
T  4558885 cttatggaaataacttatgatgtgtctataagttgtttttagtttatttccataagctct 4558826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 191
Target Start/End: Complemental strand, 447137 - 447095
Alignment:
Q  149 gaaacaacttatgatatatttataagttgtttttagcttattt 191  Q
    |||||||||||| || ||||||||||||||||| |||||||||    
T  447137 gaaacaacttataatctatttataagttgttttcagcttattt 447095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 192
Target Start/End: Original strand, 13410205 - 13410247
Alignment:
Q  150 aaacaacttatgatatatttataagttgtttttagcttatttc 192  Q
    ||||||| ||||| |||||||||||||||||||| ||||||||    
T  13410205 aaacaacatatgacatatttataagttgtttttaacttatttc 13410247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 30259201 - 30259123
Alignment:
Q  143 cttatagaaacaacttatgatatatttataagttgtttttagcttatttccatcagctctacaagacaacttatgaaaa 221  Q
    ||||| |||||| |||||||||| | ||||||||||||| || |||||||||| || ||| ||||| || |||| ||||    
T  30259201 cttatggaaacagcttatgatatgtctataagttgttttcagtttatttccataagttctccaagataatttataaaaa 30259123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 42215092 - 42215145
Alignment:
Q  170 ataagttgtttttagcttatttccatcagctctacaagacaacttatgaaaata 223  Q
    |||||||||||| ||||||||| ||| |||||| ||||| | ||||||||||||    
T  42215092 ataagttgttttcagcttatttacataagctctccaagatagcttatgaaaata 42215145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 12234872 - 12234931
Alignment:
Q  143 cttatagaaacaacttatgatatatttataagttgtttttagcttatttccatcagctct 202  Q
    |||||||||||||||||||| || | |||||| |||||| ||||||||||||| ||||||    
T  12234872 cttatagaaacaacttatgacatgtctataagctgttttcagcttatttccataagctct 12234931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 33645944 - 33646003
Alignment:
Q  143 cttatagaaacaacttatgatatatttataagttgtttttagcttatttccatcagctct 202  Q
    ||||| |||||||||||||| || | |||||||||||||||| |||||||||| ||||||    
T  33645944 cttatggaaacaacttatgacatgtctataagttgtttttaggttatttccataagctct 33646003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 227
Target Start/End: Complemental strand, 4966243 - 4966159
Alignment:
Q  143 cttatagaaacaacttatgatatatttataagttgtttttagcttatttccatcagctctacaagacaacttatgaaaatagctt 227  Q
    ||||||||||| ||||||||||| |  |||||||||||| || |||||||||| |||||| || ||   |||||||||| |||||    
T  4966243 cttatagaaaccacttatgatatgtccataagttgttttcagtttatttccataagctcttcaggatggcttatgaaaacagctt 4966159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 202
Target Start/End: Original strand, 34754819 - 34754852
Alignment:
Q  169 tataagttgtttttagcttatttccatcagctct 202  Q
    ||||||||||||| ||||||||||||||||||||    
T  34754819 tataagttgttttcagcttatttccatcagctct 34754852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 36537996 - 36537951
Alignment:
Q  142 acttatagaaacaacttatgatatatttataagttgtttttagctt 187  Q
    |||||| |||||||||||||| || || ||||||||||||||||||    
T  36537996 acttatggaaacaacttatgacatgttcataagttgtttttagctt 36537951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 190
Target Start/End: Complemental strand, 18286878 - 18286831
Alignment:
Q  143 cttatagaaacaacttatgatatatttataagttgtttttagcttatt 190  Q
    ||||| ||||||||||||||||||| ||||| ||||||||||||||||    
T  18286878 cttattgaaacaacttatgatatatctataaattgtttttagcttatt 18286831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 11707128 - 11707058
Alignment:
Q  157 ttatgatatatttataagttgtttttagcttatttccatcagctctacaagacaacttatgaaaatagctt 227  Q
    |||||| || ||||||||||||||| ||||||||| ||  |||||||||||| | |||||||||| |||||    
T  11707128 ttatgacatgtttataagttgttttcagcttattttcaaaagctctacaagatagcttatgaaaacagctt 11707058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 19460375 - 19460458
Alignment:
Q  149 gaaacaacttatgatatattt-ataagttgtttttagcttatttccatcagctctacaagacaacttatgaaaatagctttaaac 232  Q
    ||||||||||||||||| ||| ||||| |||||  ||||||||| ||| || |||  |||| |||||||||||||||||||||||    
T  19460375 gaaacaacttatgatatttttcataagctgtttc-agcttattttcataagttcttgaagataacttatgaaaatagctttaaac 19460458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 40590821 - 40590761
Alignment:
Q  167 tttataagttgtttttagcttatttccatcagctctacaagacaacttatgaaaatagctt 227  Q
    ||||||||||||||| ||||||||||||| |||||| ||||  | ||| ||||||||||||    
T  40590821 tttataagttgttttgagcttatttccataagctctccaagttagcttgtgaaaatagctt 40590761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 221
Target Start/End: Complemental strand, 2568738 - 2568667
Alignment:
Q  150 aaacaacttatgatatatttataagttgtttttagcttatttccatcagctctacaagacaacttatgaaaa 221  Q
    ||||| ||||||| ||||| ||||||| |||||||||||||| ||| |||||| || || | ||||||||||    
T  2568738 aaacagcttatgacatattcataagttatttttagcttattttcattagctctccatgatagcttatgaaaa 2568667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 8090016 - 8089958
Alignment:
Q  150 aaacaacttatgatatatttataagttgtttttagcttatttccatcagctctacaaga 208  Q
    |||||||||||||||||||  |||| |||||| ||||||||| ||| |||||| |||||    
T  8090016 aaacaacttatgatatattcctaagctgttttcagcttattttcataagctcttcaaga 8089958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 9106902 - 9106824
Alignment:
Q  150 aaacaacttatgatatattt-ataagttgtttttagcttatttccatcagctctacaagacaacttatgaaaatagctt 227  Q
    ||||||||||| || ||||| ||||| |||||| ||||||||||||| ||||   || || ||||||||||||||||||    
T  9106902 aaacaacttataatgtatttcataagctgttttcagcttatttccataagcttagcaggataacttatgaaaatagctt 9106824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 10272414 - 10272492
Alignment:
Q  143 cttatagaaacaacttatgatatatttataagttgtttttagcttatttccatcagctctacaagacaacttatgaaaa 221  Q
    |||||||||||||||||||| || | | ||||||||||| ||||||||| ||| | |||| |||||   ||||||||||    
T  10272414 cttatagaaacaacttatgacatgtctgtaagttgttttcagcttattttcataaactctccaagatggcttatgaaaa 10272492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 7674736 - 7674687
Alignment:
Q  142 acttatagaaacaacttatgatatatttataagttgtttttagcttattt 191  Q
    |||||| |||||||||||||| || |||||||| |||||| |||||||||    
T  7674736 acttatggaaacaacttatgacatgtttataaggtgttttcagcttattt 7674687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 10125708 - 10125781
Alignment:
Q  150 aaacaacttatgatatatttataagttgtttttagcttatttccatcagctctacaagacaacttatgaaaata 223  Q
    ||||||||||||| || || ||||| |||||| ||||||||| ||| |||||| || |  ||||||||||||||    
T  10125708 aaacaacttatgacatgttgataaggtgttttcagcttattttcataagctctccatggtaacttatgaaaata 10125781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 37526191 - 37526260
Alignment:
Q  152 acaacttatgatatatttataagttgtttttagcttatttccatcagctctacaagacaacttatgaaaa 221  Q
    ||||| ||||| || || ||||| |||||| ||||||||||||| |||||| ||  ||||||||||||||    
T  37526191 acaacctatgacatgttaataagctgttttcagcttatttccataagctctccagaacaacttatgaaaa 37526260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 227
Target Start/End: Complemental strand, 8481305 - 8481221
Alignment:
Q  143 cttatagaaacaacttatgatatatttataagttgtttttagcttatttccatcagctctacaagacaacttatgaaaatagctt 227  Q
    ||||| |||| || ||| || |||| ||||| || |||||||||||||||||| ||| ||  |||| |||||||||||| |||||    
T  8481305 cttatggaaataaattaagacatatgtataatttatttttagcttatttccataagccctcaaagataacttatgaaaacagctt 8481221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 33533536 - 33533600
Alignment:
Q  157 ttatgatatatttataagttgtttttagcttatttccatcagctctacaagacaacttatgaaaa 221  Q
    |||||| ||||| |||||||||||| | ||||||||||| |||||| ||||| | ||| ||||||    
T  33533536 ttatgacatattcataagttgttttcaacttatttccataagctctccaagatagcttgtgaaaa 33533600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 38104865 - 38104917
Alignment:
Q  168 ttataagttgtttttagcttatttccatcagctctacaagacaacttatgaaa 220  Q
    |||||||||||||| ||||||||||||| ||||||  |||| | |||||||||    
T  38104865 ttataagttgttttcagcttatttccataagctctctaagatagcttatgaaa 38104917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 200
Target Start/End: Original strand, 41809234 - 41809285
Alignment:
Q  149 gaaacaacttatgatatatttataagttgtttttagcttatttccatcagct 200  Q
    |||||||||||||| || || |||||||||||||||||||||||||| ||||    
T  41809234 gaaacaacttatgacatgttcataagttgtttttagcttatttccataagct 41809285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 34652019 - 34652097
Alignment:
Q  143 cttatagaaacaacttatgatatatttataagttgtttttagcttatttccatcagctctacaagacaacttatgaaaa 221  Q
    |||||||||||||||||||| || |  ||||| |||||| | ||||||||||| |||||| ||||| | ||||||||||    
T  34652019 cttatagaaacaacttatgacatgtccataagctgttttcaacttatttccataagctctccaagatagcttatgaaaa 34652097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 43259900 - 43259837
Alignment:
Q  164 atatttataagttgtttttagcttatttccatcagctctacaagacaacttatgaaaatagctt 227  Q
    ||||| ||||| |||||||||||||||||||| |||||| ||||| | || ||||||| |||||    
T  43259900 atattaataagctgtttttagcttatttccataagctcttcaagatacctaatgaaaacagctt 43259837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 221
Target Start/End: Complemental strand, 27288694 - 27288640
Alignment:
Q  167 tttataagttgtttttagcttatttccatcagctctacaagacaacttatgaaaa 221  Q
    ||||||||||||||| ||||||||||| | | ||||||| || ||||||||||||    
T  27288694 tttataagttgttttcagcttatttccgtaaactctacatgataacttatgaaaa 27288640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 14316128 - 14316177
Alignment:
Q  143 cttatagaaacaacttatgatatatttataagttgtttttagcttatttc 192  Q
    ||||| |||||||||||||| |||| |||||| |||||| ||||||||||    
T  14316128 cttatggaaacaacttatgacatatgtataagctgttttcagcttatttc 14316177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 27237875 - 27237928
Alignment:
Q  142 acttatagaaacaacttatgatatatttataagttgtttttagcttatttccat 195  Q
    ||||||||||||| ||||||| || |  ||||| ||||||||||||||||||||    
T  27237875 acttatagaaacagcttatgacatgtacataagctgtttttagcttatttccat 27237928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 29643406 - 29643451
Alignment:
Q  150 aaacaacttatgatatatttataagttgtttttagcttatttccat 195  Q
    |||||||||||||||| |||||  |||||||||| |||||||||||    
T  29643406 aaacaacttatgatatgtttattggttgtttttatcttatttccat 29643451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 227
Target Start/End: Original strand, 41032937 - 41033021
Alignment:
Q  142 acttatagaaacaacttatgatatatttataagttgtttttagcttatttccatcagctctacaagacaacttatgaaaatagctt 227  Q
    ||||||||||||||||| |   || | ||||||||||||| ||||||||||||| | ||||| |||| || |||||||||| ||||    
T  41032937 acttatagaaacaacttcttccatgtctataagttgttttcagcttatttccataaactctataagataa-ttatgaaaatcgctt 41033021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 41817248 - 41817171
Alignment:
Q  150 aaacaacttatgatatatttataagttgtttttagcttatttccatcagctctacaagacaacttatgaaaatagctt 227  Q
    ||||| ||||||| || || |||| ||||||| ||||||||||||| |||||| || || |  |||||||||||||||    
T  41817248 aaacatcttatgacatgttgataatttgttttcagcttatttccataagctctccaggatagtttatgaaaatagctt 41817171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 45314948 - 45314907
Alignment:
Q  150 aaacaacttatgatatatttataagttgtttttagcttattt 191  Q
    ||||||||||||| |||||||||||||||||| || ||||||    
T  45314948 aaacaacttatgacatatttataagttgttttcagtttattt 45314907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 3078651 - 3078707
Alignment:
Q  171 taagttgtttttagcttatttccatcagctctacaagacaacttatgaaaatagctt 227  Q
    ||||||||||||||||||||||||  |||||| ||||| | ||||| |||| |||||    
T  3078651 taagttgtttttagcttatttccagaagctctccaagatagcttataaaaacagctt 3078707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 16867812 - 16867748
Alignment:
Q  157 ttatgatatatttataagttgtttttagcttatttccatcagctctacaagacaacttatgaaaa 221  Q
    |||||| ||||| |||||||||||| | ||||||||||| |||||| ||||| | ||| ||||||    
T  16867812 ttatgacatattcataagttgttttcaacttatttccataagctctccaagatagcttgtgaaaa 16867748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 30538156 - 30538204
Alignment:
Q  143 cttatagaaacaacttatgatatatttataagttgtttttagcttattt 191  Q
    |||||||||||||||||||| || |  |||||||||||| |||||||||    
T  30538156 cttatagaaacaacttatgacatgtccataagttgttttcagcttattt 30538204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 227
Target Start/End: Original strand, 33722385 - 33722468
Alignment:
Q  144 ttatagaaacaacttatgatatatttataagttgtttttagcttatttccatcagctctacaagacaacttatgaaaatagctt 227  Q
    ||||||||| ||| ||||| |||| ||||||||||||| ||||||||||||| | ||||  | || |||||||||||| |||||    
T  33722385 ttatagaaataacatatgacatatctataagttgttttcagcttatttccataacctctgtaggataacttatgaaaaaagctt 33722468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 38867814 - 38867892
Alignment:
Q  143 cttatagaaacaacttatgatatatttataagttgtttttagcttatttccatcagctctacaagacaacttatgaaaa 221  Q
    ||||| |||| |||||||||||| |  || ||||||||||||||||||| ||| || ||| ||||| ||||||||||||    
T  38867814 cttatggaaataacttatgatatgtccatcagttgtttttagcttattttcataagttcttcaagataacttatgaaaa 38867892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 227
Target Start/End: Original strand, 14629964 - 14630033
Alignment:
Q  158 tatgatatatttataagttgtttttagcttatttccatcagctctacaagacaacttatgaaaatagctt 227  Q
    |||||||| || |||||||||||| ||||||||||||| |  ||| ||||| | ||||||||||||||||    
T  14629964 tatgatatgttcataagttgttttcagcttatttccataaagtctccaagatagcttatgaaaatagctt 14630033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 28482219 - 28482300
Alignment:
Q  146 atagaaacaacttatgatatatttataagttgtttttagcttatttccatcagctctacaagacaacttatgaaaatagctt 227  Q
    ||||||||| ||||||||||||| ||||  | |||||||||||||| | | |||||| ||||| ||||||| |||| |||||    
T  28482219 atagaaacatcttatgatatattcataaactatttttagcttattttcgtaagctctccaagataacttataaaaacagctt 28482300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 3223749 - 3223705
Alignment:
Q  148 agaaacaacttatgatatatttataagttgtttttagcttatttc 192  Q
    ||||||||||||||| || ||||||||||||||| ||||||||||    
T  3223749 agaaacaacttatgacatgtttataagttgttttcagcttatttc 3223705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 13037947 - 13037895
Alignment:
Q  143 cttatagaaacaacttatgatatatttataagttgtttttagcttatttccat 195  Q
    |||||||| ||||||| |||||| | | |||||||||||||||||||||||||    
T  13037947 cttatagatacaacttgtgatatctgtgtaagttgtttttagcttatttccat 13037895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 34290310 - 34290239
Alignment:
Q  156 cttatgatatatttataagttgtttttagcttatttccatcagctctacaagacaacttatgaaaatagctt 227  Q
    ||||||| ||||| |||||||||||| ||||||||| ||| || ||| ||||| | |||||||||| |||||    
T  34290310 cttatgacatattcataagttgttttcagcttattttcataagttcttcaagatagcttatgaaaacagctt 34290239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 221
Target Start/End: Complemental strand, 45205148 - 45205077
Alignment:
Q  150 aaacaacttatgatatatttataagttgtttttagcttatttccatcagctctacaagacaacttatgaaaa 221  Q
    |||||||||||||||| |   ||||||||||| ||||||||||||| | ||||||| || | ||||||||||    
T  45205148 aaacaacttatgatatgtccctaagttgttttcagcttatttccatgaactctacatgatagcttatgaaaa 45205077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 227
Target Start/End: Complemental strand, 16322909 - 16322852
Alignment:
Q  170 ataagttgtttttagcttatttccatcagctctacaagacaacttatgaaaatagctt 227  Q
    |||||||||||||||||||||||||| |||||| ||| | | | |||||||| |||||    
T  16322909 ataagttgtttttagcttatttccataagctcttcaaaatagcctatgaaaacagctt 16322852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 227
Target Start/End: Original strand, 28262629 - 28262686
Alignment:
Q  170 ataagttgtttttagcttatttccatcagctctacaagacaacttatgaaaatagctt 227  Q
    |||| ||||||||||||||||||||| || |||| | || |||||||||||| |||||    
T  28262629 ataaattgtttttagcttatttccataagttctataggataacttatgaaaacagctt 28262686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 29385671 - 29385622
Alignment:
Q  178 tttttagcttatttccatcagctctacaagacaacttatgaaaatagctt 227  Q
    |||| ||| ||||||||| |||| | ||||||||||||||||||||||||    
T  29385671 ttttcagcctatttccataagctattcaagacaacttatgaaaatagctt 29385622  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 4699605 - 4699657
Alignment:
Q  150 aaacaacttatgatatatttataagttgtttttagcttatttccatcagctct 202  Q
    ||||||||||||| || || ||||| ||||||||||||||||| || ||||||    
T  4699605 aaacaacttatgacatgttcataagctgtttttagcttatttctataagctct 4699657  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 6932958 - 6933022
Alignment:
Q  157 ttatgatatatttataagttgtttttagcttatttccatcagctctacaagacaacttatgaaaa 221  Q
    ||||||||| || |||||||  ||| || |||||||||| |||||| || |||||||||||||||    
T  6932958 ttatgatatgttcataagttagtttcagtttatttccataagctcttcaggacaacttatgaaaa 6933022  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 221
Target Start/End: Complemental strand, 19389978 - 19389910
Alignment:
Q  154 aacttatgatatatttataagttgt-ttttagcttatttccatcagctctacaagacaacttatgaaaa 221  Q
    |||||||||||| || ||||||||| ||||||||||||| ||  |||||| ||||| | ||||||||||    
T  19389978 aacttatgatatgttcataagttgttttttagcttattttcacaagctctccaagatagcttatgaaaa 19389910  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 191
Target Start/End: Complemental strand, 24153368 - 24153320
Alignment:
Q  143 cttatagaaacaacttatgatatatttataagttgtttttagcttattt 191  Q
    |||||||||||||||||||| ||||  || ||||||||||| |||||||    
T  24153368 cttatagaaacaacttatgacatatccatgagttgtttttaacttattt 24153320  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 18628555 - 18628604
Alignment:
Q  172 aagttgtttttagcttatttccatcagctctacaagacaacttatgaaaa 221  Q
    |||||||||| ||||||||||||| |||||| ||||| ||||||||||||    
T  18628555 aagttgttttcagcttatttccataagctctccaagataacttatgaaaa 18628604  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 29263451 - 29263379
Alignment:
Q  149 gaaacaacttatgatatatttataagttgtttttagcttatttccatcagctctacaagacaacttatgaaaa 221  Q
    |||||| |||||||||| || |||||||||||| ||||||||||||  |||||| || || | ||||||||||    
T  29263451 gaaacagcttatgatatgttcataagttgttttcagcttatttccacaagctctgcaggatagcttatgaaaa 29263379  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 46110283 - 46110231
Alignment:
Q  150 aaacaacttatgatatatttataagttgtttttagcttatttccatcagctct 202  Q
    ||||||||||||||||| | |||||||||||| |||||||||| || ||||||    
T  46110283 aaacaacttatgatatactcataagttgttttcagcttatttctataagctct 46110231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 56186892 - 56186968
Alignment:
Q  151 aacaacttatgatatatttataagttgtttttagcttatttccatcagctctacaagacaacttatgaaaatagctt 227  Q
    |||||||||| | ||||| ||||||||| || | ||||||||||| |||||| |  || ||||||||||||||||||    
T  56186892 aacaacttataacatattcataagttgtattaaacttatttccataagctctcccggataacttatgaaaatagctt 56186968  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 227
Target Start/End: Original strand, 7694020 - 7694077
Alignment:
Q  170 ataagttgtttttagcttatttccatcagctctacaagacaacttatgaaaatagctt 227  Q
    |||||||||||| ||||||||||||| | |||| || || |||||||||||| |||||    
T  7694020 ataagttgttttcagcttatttccataaactctccaggataacttatgaaaacagctt 7694077  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 28232626 - 28232581
Alignment:
Q  149 gaaacaacttatgatatatttataagttgtttttagcttatttcca 194  Q
    ||||||||||||||  ||||||||||||||||| | ||||||||||    
T  28232626 gaaacaacttatgacttatttataagttgttttcatcttatttcca 28232581  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 221
Target Start/End: Original strand, 53673642 - 53673719
Alignment:
Q  144 ttatagaaacaacttatgatatatttataagttgtttttagcttatttccatcagctctacaagacaacttatgaaaa 221  Q
    |||| |||||||| ||| |||| |  |||||||||||| ||||||||| ||| |||||| ||||| | ||||||||||    
T  53673642 ttatggaaacaacatatcatatgtccataagttgttttcagcttatttacataagctctccaagatagcttatgaaaa 53673719  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 195
Target Start/End: Original strand, 55547038 - 55547079
Alignment:
Q  154 aacttatgatatatttataagttgtttttagcttatttccat 195  Q
    ||||||||| || | |||||||||||||||||||||||||||    
T  55547038 aacttatgacatgtctataagttgtttttagcttatttccat 55547079  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 17975380 - 17975436
Alignment:
Q  171 taagttgtttttagcttatttccatcagctctacaagacaacttatgaaaatagctt 227  Q
    ||||||||||||||||||||||||  |||||| ||||| | ||||| |||| |||||    
T  17975380 taagttgtttttagcttatttccagaagctctccaagatagcttataaaaacagctt 17975436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 50471235 - 50471279
Alignment:
Q  150 aaacaacttatgatatatttataagttgtttttagcttatttcca 194  Q
    ||||||||||||| ||| ||||||| | |||||||||||||||||    
T  50471235 aaacaacttatgacatagttataagctatttttagcttatttcca 50471279  T

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Target: scaffold0153 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 6478 - 6536
Alignment:
Q  144 ttatagaaacaacttatgatatatttataagttgtttttagcttatttccatcagctct 202  Q
    ||||||||||||| ||||| || | ||||||||||||| || |||||||||| ||||||    
T  6478 ttatagaaacaacctatgacatgtctataagttgttttcagtttatttccataagctct 6536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 13498 - 13556
Alignment:
Q  144 ttatagaaacaacttatgatatatttataagttgtttttagcttatttccatcagctct 202  Q
    ||||||||||||| ||||| || | ||||||||||||| || |||||||||| ||||||    
T  13498 ttatagaaacaacctatgacatgtctataagttgttttcagtttatttccataagctct 13556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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