View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13808_high_36 (Length: 281)
Name: NF13808_high_36
Description: NF13808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13808_high_36 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 19 - 267
Target Start/End: Complemental strand, 3425210 - 3424962
Alignment:
| Q |
19 |
cggtgtagatgtaataatccatcacatcataagaatttacaggttggttgagcacatggtttcaatatattcattttggctttaaacaaaaatggattga |
118 |
Q |
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| T |
3425210 |
cggtgtagatgtaataatccatcacatcataagaatttacaggttggttgagcacatggtttcaatatattcattttggctttaaacaaaaatggattga |
3425111 |
T |
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| Q |
119 |
cattttttcatatnnnnnnnnnnnnnnnntctcgactttaggtatctcagtcaatgtcaatattttaatccacacatgcacatatacatattacatgatt |
218 |
Q |
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| T |
3425110 |
cattttttcatataaaacaaaaaataaaatctcgactttaggtatctcagcacttgtcaatattttaatccacacatgcacatatacatattacatgatt |
3425011 |
T |
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| Q |
219 |
attaacaagaatcattgtggaagaagatcaatgcatagctatggttgat |
267 |
Q |
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| T |
3425010 |
attaacaagaatcattgtggaagaagatcaatgaatagctatggttgat |
3424962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 81
Target Start/End: Complemental strand, 6607363 - 6607320
Alignment:
| Q |
38 |
catcacatcataagaatttacaggttggttgagcacatggtttc |
81 |
Q |
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| T |
6607363 |
catcacatcataagaatttatatgttggttgagcacatggtttc |
6607320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 48
Target Start/End: Original strand, 11914835 - 11914863
Alignment:
| Q |
20 |
ggtgtagatgtaataatccatcacatcat |
48 |
Q |
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| T |
11914835 |
ggtgtagatgtaataatccatcacatcat |
11914863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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