View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13808_high_4 (Length: 630)
Name: NF13808_high_4
Description: NF13808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13808_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 421; Significance: 0; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Complemental strand, 39825057 - 39824598
Alignment:
| Q |
1 |
tgaagttgtttgttagtttccttacattaaatgcagattcaaggattcgaggctcgaatccggaaagtactgacagtggggctccacctccaatatagaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
39825057 |
tgaagttgtttgttagtttccttacattaaatgcagattcaaggattcgaggctcgaatccggaaggtactgacagtggggctccacctccaatatagaa |
39824958 |
T |
|
| Q |
101 |
tgactacaacatataaacaagccatattaatttattagaaagattaatcatattatatatgaaagtatggattgattatacaaatgcatatatatacctg |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39824957 |
agactacaacatataaacaagctatattaatttattagaaagattaatcatattatatatgaaagtatggattgattatacaaatgcatatatatacctg |
39824858 |
T |
|
| Q |
201 |
gaaaataccaattctcaaactctcggatgggtcgatgctacaaataatgtgaagcttttgagcctccttagtattcaacaaatagaatgcagaaccagct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39824857 |
gaaaataccaattctcaaactctcggatgggtcgatgctacaaataatgtgaagcttttgagcctccccagtattcaacaaatagaatgcagaaccagct |
39824758 |
T |
|
| Q |
301 |
ggaatttgataaacatctcccttcttcaaatccctctctgccaattcatccttatatatgaatcccacctttgcttctcctgaaatccgttttcaagtta |
400 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
39824757 |
ggaatttgatacacatctcccttcttcaaatccctctctgccaattcatccttatatatgaatcccacctttgcttatcctgaaatccgttttcaagtta |
39824658 |
T |
|
| Q |
401 |
actcataaattttcaaaatacatttatatctgggaattacatctttcacaagtcatcttaa |
461 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
39824657 |
actcataaattttcaaaatacatttatatctgggaatt-catctttcacaagtgatcttaa |
39824598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Complemental strand, 39805020 - 39804560
Alignment:
| Q |
1 |
tgaagttgtttgttagtttccttacattaaatgcagattcaaggattcgaggctcgaatccggaaagtactgacagtggggctccacctccaatatagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
39805020 |
tgaagttgtttgttagtttccttacattaaatgcagattcaaggattcgaggctcgaatccggaaagtaccgacagtggggctccacctccaatatagaa |
39804921 |
T |
|
| Q |
101 |
tgactacaacatataaacaagccatattaatttattagaaagattaatcatattatatatgaaagtatggattgattatacaaatgcatatatatacctg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| || |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39804920 |
agactacaacatataaacaagccatattaatttattagaaagattgatcgtattatatataaaggtattgattgattatacaaatgcatatatatacctg |
39804821 |
T |
|
| Q |
201 |
gaaaataccaattctcaaactctcggatgggtcgatgctacaaataatgtgaagcttttgagcctccttagtattcaacaaatagaatgcagaaccagct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
39804820 |
gaaaataccaattctcaaactctcggatgggtcaatgctacaaataatgtgaagcttttgagcctccccagtattcaacaaatagaatgcagaaccagca |
39804721 |
T |
|
| Q |
301 |
ggaatttgataaacatctcccttcttcaaatccctctctgccaattcatccttatatatgaatcccacctttgcttctcctgaaatccgttttcaagtta |
400 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||| | ||| ||||||| |
|
|
| T |
39804720 |
ggaatttgatacacatctcccttcttcaaatccctctctgccaattcatcctcatttacgaatcccacctttgcttctcctgaaattcatttacaagtta |
39804621 |
T |
|
| Q |
401 |
actcataaattttcaaaatacatttatatctgggaattacatctttcacaagtcatcttaa |
461 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
39804620 |
actcataaattttcaaaatacatttatagctgggaattacatctttcacaagggatcttaa |
39804560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 6 - 461
Target Start/End: Complemental strand, 39813543 - 39813089
Alignment:
| Q |
6 |
ttgtttgttagtttccttacattaaatgcagattcaaggattcgaggctcgaatccggaaagtactgacagtggggctccacctccaatatagaatgact |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||| |||||||||||||| |||| |
|
|
| T |
39813543 |
ttgtttgttagtttccttacattaaatgcagattcaaggattcgaggctcgaatccggaaagtaccgacactggagctcctcctccaatatagaaagact |
39813444 |
T |
|
| Q |
106 |
acaacatataaacaagccatattaatttattagaaagattaatcatattatatatgaaagtatggattgattatacaaatgcatatatatacctggaaaa |
205 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||||| |||||||||| || |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
39813443 |
acaacatataaacaagccatattaattcattcgaaagattaatcgtattatatataaaggtattgattgattatacaaatgcatatatatacctggaaaa |
39813344 |
T |
|
| Q |
206 |
taccaattctcaaactctcggatgggtcgatgctacaaataatgtgaagcttttgagcctccttagtattcaacaaatagaatgcagaaccagctggaat |
305 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
39813343 |
taccaattctcaaactctcggatgggtcaatgctacaaataatgtgaagcttttgagcctccccagtattcaacaaatagaatgcagaaccagcaggaat |
39813244 |
T |
|
| Q |
306 |
ttgataaacatctcccttcttcaaatccctctctgccaattcatccttatatatgaatcccacctttgcttctcctgaaatccgttttcaagttaactca |
405 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
39813243 |
ttgatacacatctcccttcttcaaatccctctctgccaattcatcctcatttacaaatcccacctttgcttctcctgaaatccattttcaagttcactca |
39813144 |
T |
|
| Q |
406 |
taaattttcaaaatacatttatatctgggaattacatctttcacaagtcatcttaa |
461 |
Q |
| |
|
|||||||||||| |||||||||| ||| ||| ||||||||||||||| ||||||| |
|
|
| T |
39813143 |
taaattttcaaattacatttatagctgagaa-tacatctttcacaagcgatcttaa |
39813089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 39921325 - 39920914
Alignment:
| Q |
1 |
tgaagttgtttgttagtttccttacattaaatgcagattcaaggattcgaggctcgaatccggaaagtactgacagtggggctccacctccaatatagaa |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||| ||||| |||||||||||||| |
|
|
| T |
39921325 |
tgaagttgtttgtttgtttccttacattaaatgcagattcaaggattcgaggctcgaatccggaaaataccgacactggagctcctcctccaatatagaa |
39921226 |
T |
|
| Q |
101 |
tgactacaa-catataaacaagccatatta----atttattagaaagattaatcatattatatatgaaagtatggattgattatacaaatgcatatatat |
195 |
Q |
| |
|
|||||||| ||||||||||| |||||| | || ||||| ||||||||||| ||||||||| || |||| || |||||||||||| | ||||| |
|
|
| T |
39921225 |
agactacaaacatataaacaaaccatatcattaaatggattagcaagattaatcaaattatatataaaggtat----tgcttatacaaatgcttgtatat |
39921130 |
T |
|
| Q |
196 |
acctggaaaataccaattctcaaactctcggatgggtcgatgctacaaataatgtgaagcttttgagcctccttagtattcaacaaatagaatgcagaac |
295 |
Q |
| |
|
||||||||||||||||||| ||||||||| || ||||| ||||| |||||||||||||| |||||| ||||| | ||||| ||||||| |||||||||| |
|
|
| T |
39921129 |
acctggaaaataccaattcccaaactctctgaggggtcaatgctgcaaataatgtgaagtttttgaccctccccaatattcgacaaataaaatgcagaac |
39921030 |
T |
|
| Q |
296 |
cagctggaatttgataaacatctcccttcttcaaatccctctctgccaattcatccttatatatgaatcccacctttgcttctcctgaaatccgttttca |
395 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||| || ||||| ||||||||| || ||| |||||||| ||||||||||| |||||||||| |||||| |
|
|
| T |
39921029 |
cagctggaatttgatatacatcccccttcttcaattcgctctcctccaattcattctcatacatgaatccaacctttgcttcccctgaaatccattttca |
39920930 |
T |
|
| Q |
396 |
agttaactcataaatt |
411 |
Q |
| |
|
| ||||||| |||||| |
|
|
| T |
39920929 |
acttaactcctaaatt |
39920914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 39910006 - 39909595
Alignment:
| Q |
1 |
tgaagttgtttgttagtttccttacattaaatgcagattcaaggattcgaggctcgaatccggaaagtactgacagtggggctccacctccaatatagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||| |||| ||| ||||| |||||||||||||| |
|
|
| T |
39910006 |
tgaagttgtttgttagtttccttacattaaatgcggattcaaggatttgaggctcgaatccggaaaataccgacactggagctcctcctccaatatagaa |
39909907 |
T |
|
| Q |
101 |
tgactacaa-catataaacaagccatatta----atttattagaaagattaatcatattatatatgaaagtatggattgattatacaaatgcatatatat |
195 |
Q |
| |
|
||||||||| ||| ||||| | |||||| | || ||||| || |||||||| ||||||||| || |||| ||||||||||||||| | ||||| |
|
|
| T |
39909906 |
tgactacaaacatgtaaaccaaccatatcattaaatggattagcaacattaatcaaattatatataaaggtat----tgattatacaaatgcttgtatat |
39909811 |
T |
|
| Q |
196 |
acctggaaaataccaattctcaaactctcggatgggtcgatgctacaaataatgtgaagcttttgagcctccttagtattcaacaaatagaatgcagaac |
295 |
Q |
| |
|
||||||||||||||||||| ||||||||| || ||||| ||||| |||||||||||||| |||||| ||||| | |||| ||||||| |||||||||| |
|
|
| T |
39909810 |
acctggaaaataccaattcccaaactctctgaggggtcaatgctgcaaataatgtgaagtttttgaccctccccaatatttgacaaataaaatgcagaac |
39909711 |
T |
|
| Q |
296 |
cagctggaatttgataaacatctcccttcttcaaatccctctctgccaattcatccttatatatgaatcccacctttgcttctcctgaaatccgttttca |
395 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||| || ||||| ||||||||| || ||| |||||||| ||||||||||| |||||||||| |||||| |
|
|
| T |
39909710 |
cagctggaatttgatacacatcccccttcttcaattcactctcctccaattcattctcatacatgaatccaacctttgcttcccctgaaatccattttca |
39909611 |
T |
|
| Q |
396 |
agttaactcataaatt |
411 |
Q |
| |
|
| ||||||| |||||| |
|
|
| T |
39909610 |
acttaactcctaaatt |
39909595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 6 - 411
Target Start/End: Complemental strand, 39882632 - 39882226
Alignment:
| Q |
6 |
ttgtttgttagtttccttacattaaatgcagattcaaggattcgaggctcgaatccggaaagtactgacagtggggctccacctccaatatagaatgact |
105 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| | ||| ||||| |||||||||||||| |||| |
|
|
| T |
39882632 |
ttgtttgttagtttccttacattaaatgccgattcaaggattcgatgctcgaatccggaaagtactgataatggagctcctcctccaatatagaaagact |
39882533 |
T |
|
| Q |
106 |
acaa-catataaacaagccatat----taatttattagaaagattaatcatattatatatgaaagtatggattgattatacaaatgcatatatatacctg |
200 |
Q |
| |
|
|||| ||| |||| | ||||| |||| ||||| ||||||||||| | ||||||| || |||| || |||| ||||||| | |||||||||| |
|
|
| T |
39882532 |
acaaacatgtaaagcaaacatatcatttaatggattagcaagattaatcaaactatatataaaggtat----tggttatgcaaatgcttgtatatacctg |
39882437 |
T |
|
| Q |
201 |
gaaaataccaattctcaaactctcggatgggtcgatgctacaaataatgtgaagcttttgagcctccttagtattcaacaaatagaatgcagaaccagct |
300 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| ||||| |||||||||||||| |||||| |||| | ||||| ||||||||||||||||||||||| |
|
|
| T |
39882436 |
gaaaataccaattctcaaactctctgaggggtcaatgctgcaaataatgtgaagtttttgaccctcaccaatattcgacaaatagaatgcagaaccagct |
39882337 |
T |
|
| Q |
301 |
ggaatttgataaacatctcccttcttcaaatccctctctgccaattcatccttatatatgaatcccacctttgcttctcctgaaatccgttttcaagtta |
400 |
Q |
| |
|
||||||||||| ||||| ||||||||||| || ||||| |||||||||||| ||| |||| ||| ||||||||||| |||||||||| ||||||| ||| |
|
|
| T |
39882336 |
ggaatttgatatacatcccccttcttcaattcgctctcctccaattcatcctcatacatgattccaacctttgcttcccctgaaatccattttcaactta |
39882237 |
T |
|
| Q |
401 |
actcataaatt |
411 |
Q |
| |
|
|||| |||||| |
|
|
| T |
39882236 |
actcctaaatt |
39882226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 459 - 613
Target Start/End: Complemental strand, 39824575 - 39824425
Alignment:
| Q |
459 |
taaattttaaatatctagccatgttactcgtaagttattttgtcatgcagatcgtacattggaaaacctatatggatcgatgatatgatacctgtaagga |
558 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39824575 |
taaattttaaatatctagccatgttactcgtaa----ttttgtcatgcagatcgtacattggaaaacctatatggatcgatgatatgatacctgtaagga |
39824480 |
T |
|
| Q |
559 |
caaatatgatgagagtggaatcaagatattgaggaacaaaaagtgagcttggttc |
613 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39824479 |
caaatatgatgagagtggaatcaagatattgaggaacaaaaagtgggcttggttc |
39824425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 459 - 613
Target Start/End: Complemental strand, 39813066 - 39812912
Alignment:
| Q |
459 |
taaattttaaatatctagccatgttactcgtaagttattttgtcatgcagatcgtacattggaaaacctatatggatcgatgatatgatacctgtaagga |
558 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||| |||||||| |||||||||||||||| ||| |||||| ||||||||||||||||| ||| |
|
|
| T |
39813066 |
taaattttaaatatctacccatgttactcctaagttatttagtcatgcaaatcgtacattggaaaatctaaatggattaatgatatgatacctgtatgga |
39812967 |
T |
|
| Q |
559 |
caaatatgatgagagtggaatcaagatattgaggaacaaaaagtgagcttggttc |
613 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39812966 |
caaatacgatgagagtagaatcaagatattgaggaacaaaaagtgagcttggttc |
39812912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 520 - 613
Target Start/End: Complemental strand, 39920450 - 39920357
Alignment:
| Q |
520 |
gaaaacctatatggatcgatgatatgatacctgtaaggacaaatatgatgagagtggaatcaagatattgaggaacaaaaagtgagcttggttc |
613 |
Q |
| |
|
||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39920450 |
gaaaatctaaatggatcaatgatatgatacctgtaaggacaaatatgatgagagtagaatcaagatattgaggaacaaaaagtgagcttggttc |
39920357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 538 - 613
Target Start/End: Complemental strand, 39804316 - 39804241
Alignment:
| Q |
538 |
atgatatgatacctgtaaggacaaatatgatgagagtggaatcaagatattgaggaacaaaaagtgagcttggttc |
613 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39804316 |
atgatatgatacctgtaaggacaaatatgatgagagtagaatcaagatattgaggaacaaaaagtgagcttggttc |
39804241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 538 - 613
Target Start/End: Complemental strand, 39908930 - 39908855
Alignment:
| Q |
538 |
atgatatgatacctgtaaggacaaatatgatgagagtggaatcaagatattgaggaacaaaaagtgagcttggttc |
613 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39908930 |
atgatatgatacctgtaaggacaaatatgatgagagtagaatcaagatattgaggaacaaaaagtgagcttggttc |
39908855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 539 - 613
Target Start/End: Complemental strand, 39881594 - 39881520
Alignment:
| Q |
539 |
tgatatgatacctgtaaggacaaatatgatgagagtggaatcaagatattgaggaacaaaaagtgagcttggttc |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39881594 |
tgatatgatacctgtaaggacaaatatgattagagtggaatccagatattgaggaacaaaaagtgagcttggttc |
39881520 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 455 - 518
Target Start/End: Complemental strand, 39804543 - 39804480
Alignment:
| Q |
455 |
atcttaaattttaaatatctagccatgttactcgtaagttattttgtcatgcagatcgtacatt |
518 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||| ||| |||||||| || ||||||| |
|
|
| T |
39804543 |
atcttaaattttaagtatctagccatgttactcctaagttttttagtcatgcaaattgtacatt |
39804480 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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