View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13808_high_46 (Length: 227)
Name: NF13808_high_46
Description: NF13808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13808_high_46 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 33501524 - 33501754
Alignment:
| Q |
1 |
catttagctaagttcgctaaatacaccgaatctaatgcaaaaacaacaacttcttcaaatgaatataacaaatgagnnnnnnnnnnnnnnnnn----aga |
96 |
Q |
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| T |
33501524 |
catttagctaagttcgccaaatacaccgaatctagtgcaaaaacaataacttcttcaaatgaatataacaaatgagtttttttctctctcattttttaga |
33501623 |
T |
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| Q |
97 |
aaaattaatctataattgtaattnnnnnnnttctgtcataataatgtttttgtttcataatgaaaataattttttataatccaacagagatgaattgatg |
196 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33501624 |
aaaattaatctataattgtaattaaaaaaattctgtcataataatgtttttgtttcataatgaaaataattttttataatccaacagagatgaattgatg |
33501723 |
T |
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| Q |
197 |
aaacgaattacttctctctctgaaatgatga |
227 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
33501724 |
aaacgaattacttctctctctgaaatgatga |
33501754 |
T |
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