View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13808_high_7 (Length: 582)

Name: NF13808_high_7
Description: NF13808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13808_high_7
NF13808_high_7
[»] chr7 (8 HSPs)
chr7 (255-562)||(5715669-5715976)
chr7 (8-192)||(5715046-5715224)
chr7 (80-137)||(5939017-5939074)
chr7 (88-137)||(30133982-30134031)
chr7 (87-128)||(42656457-42656498)
chr7 (80-137)||(47004020-47004077)
chr7 (86-126)||(5276168-5276208)
chr7 (86-126)||(31341138-31341178)
[»] chr6 (2 HSPs)
chr6 (72-124)||(2027478-2027530)
chr6 (89-126)||(33385480-33385517)
[»] chr2 (13 HSPs)
chr2 (73-128)||(17952774-17952829)
chr2 (88-137)||(5045245-5045294)
chr2 (86-134)||(5998788-5998836)
chr2 (91-137)||(7825185-7825231)
chr2 (86-128)||(9530810-9530852)
chr2 (87-137)||(31461371-31461421)
chr2 (73-123)||(31740032-31740082)
chr2 (73-118)||(3458609-3458654)
chr2 (85-118)||(26167698-26167731)
chr2 (73-138)||(30537600-30537665)
chr2 (87-128)||(32098395-32098436)
chr2 (72-140)||(3423840-3423908)
chr2 (86-114)||(10177746-10177774)
[»] chr5 (4 HSPs)
chr5 (79-140)||(7096206-7096267)
chr5 (87-128)||(11615450-11615491)
chr5 (73-137)||(35135735-35135799)
chr5 (73-118)||(37063147-37063192)
[»] chr3 (9 HSPs)
chr3 (73-126)||(20192679-20192732)
chr3 (73-140)||(43116501-43116568)
chr3 (88-162)||(41159017-41159091)
chr3 (91-137)||(45236687-45236733)
chr3 (79-125)||(52450131-52450177)
chr3 (73-126)||(1395615-1395668)
chr3 (73-126)||(32555054-32555107)
chr3 (73-126)||(49586989-49587042)
chr3 (73-105)||(54965471-54965503)
[»] chr1 (7 HSPs)
chr1 (88-137)||(4200162-4200211)
chr1 (86-128)||(35080156-35080198)
chr1 (81-126)||(1730836-1730881)
chr1 (73-118)||(17420155-17420200)
chr1 (73-118)||(42336614-42336659)
chr1 (86-126)||(43420025-43420065)
chr1 (86-126)||(43420202-43420242)
[»] chr8 (9 HSPs)
chr8 (73-137)||(6918252-6918316)
chr8 (91-137)||(1664316-1664362)
chr8 (80-126)||(31315533-31315579)
chr8 (73-126)||(26215440-26215493)
chr8 (73-118)||(26820151-26820196)
chr8 (80-137)||(38561659-38561716)
chr8 (87-140)||(41620378-41620431)
chr8 (91-135)||(1892302-1892346)
chr8 (86-126)||(34788513-34788553)
[»] chr4 (4 HSPs)
chr4 (79-118)||(37636284-37636323)
chr4 (86-137)||(51044545-51044596)
chr4 (79-165)||(24160574-24160660)
chr4 (73-137)||(4071816-4071879)
[»] scaffold0199 (1 HSPs)
scaffold0199 (91-137)||(6757-6803)
[»] scaffold0590 (1 HSPs)
scaffold0590 (73-126)||(1147-1200)
[»] scaffold0275 (1 HSPs)
scaffold0275 (73-126)||(2775-2828)


Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 255 - 562
Target Start/End: Original strand, 5715669 - 5715976
Alignment:
Q  255 tctcttttctcttctattggtgttgagtttcttgttttattacattttgttttgatgtctttatgacaataatggactcaatgattgaaaagtcttcaat 354  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5715669 tctcttttctcttctgttggtgttgagcttcttgttttattacattttgttttgaagtctttatgacaataatggactcaatgattgaaaagtcttcaat 5715768  T
Q  355 ggtttttgtcaataatgagaataatggttgagaagcttgtaatggtgtttggctgaaataggtgtgggcacagattcatgataaactatttttagaaaat 454  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5715769 ggtttttgtcaataatgagaataatgattgagaagcttgtaattgtgtttggctgaaataggtgtgggcacagattcatgataaactatttttagaaaat 5715868  T
Q  455 aatatctttccacaaaatctcaagagggtttaaatatctctttcaaattcnnnnnnncattaaattattgaaaatttgaataattgttacacttgttgag 554  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       | |||||||||||||||||||||||||||||||||||||||||    
T  5715869 aatatctttccacaaaatctcaagagggtttaaatatctctttcaaattcaaaaaatcgttaaattattgaaaatttgaataattgttacacttgttgag 5715968  T
Q  555 aaccactt 562  Q
    ||||||||    
T  5715969 aaccactt 5715976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 8 - 192
Target Start/End: Original strand, 5715046 - 5715224
Alignment:
Q  8 aaagtcaacaatctctgatgctaggaatgatccgtgacatgtttatttgtgtttttagcctatagttataagaaaattgtttgactttattttatctttc 107  Q
    ||||| |||| |||||| ||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5715046 aaagtgaacagtctctggtgctaggaatggtctgtgacatgtttatttgtgtttttagcttatagttataagaaaattgtttgactttattttatctttc 5715145  T
Q  108 gttataaaaattgcttatatagaaacacttgtacgatcagcgtttaattacgttgttttcccaaacaaggtctaagtcaccataa 192  Q
    |||||| |||| ||||||||||||||||||      | |||||||||| | |||| |||  ||||||| ||||||||||||||||    
T  5715146 gttatagaaatagcttatatagaaacactt------taagcgtttaatcatgttggtttttcaaacaaagtctaagtcaccataa 5715224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 5939074 - 5939017
Alignment:
Q  80 aaaattgtttgactttattttatctttcgttataaaaattgcttatatagaaacactt 137  Q
    |||||||||||||||||||| || ||| |||||||||||  |||||| | ||||||||    
T  5939074 aaaattgtttgactttatttaattttttgttataaaaataacttatacataaacactt 5939017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 137
Target Start/End: Complemental strand, 30134031 - 30133982
Alignment:
Q  88 ttgactttattttatctttcgttataaaaattgcttatatagaaacactt 137  Q
    ||||||||||||||||||| ||| ||||||| ||||||| | ||||||||    
T  30134031 ttgactttattttatcttttgttgtaaaaatagcttatacataaacactt 30133982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 42656498 - 42656457
Alignment:
Q  87 tttgactttattttatctttcgttataaaaattgcttatata 128  Q
    |||||||||||||||||||| |||||| |||| |||||||||    
T  42656498 tttgactttattttatcttttgttatagaaatagcttatata 42656457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 47004077 - 47004020
Alignment:
Q  80 aaaattgtttgactttattttatctttcgttataaaaattgcttatatagaaacactt 137  Q
    ||||| ||||||||||||||||||| | |||||| |||| ||||| ||| ||||||||    
T  47004077 aaaatagtttgactttattttatctattgttatagaaatagcttacatataaacactt 47004020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 5276208 - 5276168
Alignment:
Q  86 gtttgactttattttatctttcgttataaaaattgcttata 126  Q
    |||||||||||| |||||||| ||||||||||| |||||||    
T  5276208 gtttgactttatgttatcttttgttataaaaatagcttata 5276168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 31341178 - 31341138
Alignment:
Q  86 gtttgactttattttatctttcgttataaaaattgcttata 126  Q
    ||||||||||||||||||||| |||||| |||| |||||||    
T  31341178 gtttgactttattttatcttttgttatacaaatagcttata 31341138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 2027478 - 2027530
Alignment:
Q  72 gttataagaaaattgtttgactttattttatctttcgttataaaaattgctta 124  Q
    |||||| |||||| ||||||||||||||||||||| ||||||||||| |||||    
T  2027478 gttatatgaaaatagtttgactttattttatcttttgttataaaaatagctta 2027530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 33385517 - 33385480
Alignment:
Q  89 tgactttattttatctttcgttataaaaattgcttata 126  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  33385517 tgacttcattttatcttttgttataaaaattgcttata 33385480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 73 - 128
Target Start/End: Original strand, 17952774 - 17952829
Alignment:
Q  73 ttataagaaaattgtttgactttattttatctttcgttataaaaattgcttatata 128  Q
    ||||| |||||| ||||||||||||||||||||| |||||| |||| |||||||||    
T  17952774 ttatatgaaaatagtttgactttattttatcttttgttatagaaatagcttatata 17952829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 88 - 137
Target Start/End: Original strand, 5045245 - 5045294
Alignment:
Q  88 ttgactttattttatctttcgttataaaaattgcttatatagaaacactt 137  Q
    ||||||||||||||||||| ||||||||||| ||||||| | ||||||||    
T  5045245 ttgactttattttatcttttgttataaaaatagcttatacataaacactt 5045294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 5998788 - 5998836
Alignment:
Q  86 gtttgactttattttatctttcgttataaaaattgcttatatagaaaca 134  Q
    |||| |||||||||||||||| ||||||||||| ||||||||| |||||    
T  5998788 gtttaactttattttatcttttgttataaaaatagcttatatataaaca 5998836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 137
Target Start/End: Complemental strand, 7825231 - 7825185
Alignment:
Q  91 actttattttatctttcgttataaaaattgcttatatagaaacactt 137  Q
    |||||| ||||||||| ||||||||||| ||||||| ||||||||||    
T  7825231 actttactttatcttttgttataaaaatagcttatacagaaacactt 7825185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 128
Target Start/End: Original strand, 9530810 - 9530852
Alignment:
Q  86 gtttgactttattttatctttcgttataaaaattgcttatata 128  Q
    |||| ||||||||||||||||| |||||||||| |||||||||    
T  9530810 gttttactttattttatctttcattataaaaatagcttatata 9530852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 31461421 - 31461371
Alignment:
Q  87 tttgactttattttatctttcgttataaaaattgcttatatagaaacactt 137  Q
    |||||||||||||||||||| |||||| |||| ||||||||| || |||||    
T  31461421 tttgactttattttatcttttgttatagaaatagcttatatataaccactt 31461371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 73 - 123
Target Start/End: Original strand, 31740032 - 31740082
Alignment:
Q  73 ttataagaaaattgtttgactttattttatctttcgttataaaaattgctt 123  Q
    ||||| |||||| ||||||||||||||||||||| |||||| |||| ||||    
T  31740032 ttatatgaaaatagtttgactttattttatctttagttatagaaatagctt 31740082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 3458654 - 3458609
Alignment:
Q  73 ttataagaaaattgtttgactttattttatctttcgttataaaaat 118  Q
    ||||| |||||  ||||||||||||||||||||| |||||||||||    
T  3458654 ttatatgaaaaaagtttgactttattttatcttttgttataaaaat 3458609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 118
Target Start/End: Complemental strand, 26167731 - 26167698
Alignment:
Q  85 tgtttgactttattttatctttcgttataaaaat 118  Q
    |||||||||||||||||||||| |||||||||||    
T  26167731 tgtttgactttattttatcttttgttataaaaat 26167698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 30537600 - 30537665
Alignment:
Q  73 ttataagaaaattgtttgactttattttatctttcgttataaaaattgcttatatagaaacacttg 138  Q
    ||||| ||||| ||||||||||||| | |||||| |||||| |||| ||||| ||| |||||||||    
T  30537600 ttatatgaaaactgtttgactttatatgatctttagttatagaaatagcttacatataaacacttg 30537665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 128
Target Start/End: Original strand, 32098395 - 32098436
Alignment:
Q  87 tttgactttattttatctttcgttataaaaattgcttatata 128  Q
    |||||||||||||||||||| |||||| |||| |||||||||    
T  32098395 tttgactttattttatcttttgttatagaaatagcttatata 32098436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 72 - 140
Target Start/End: Original strand, 3423840 - 3423908
Alignment:
Q  72 gttataagaaaattgtttgactttattttatctttcgttataaaaattgcttatatagaaacacttgta 140  Q
    |||||| ||||||  |||||||||||||||||||| | || ||||||  |||||| | |||||||||||    
T  3423840 gttatatgaaaataatttgactttattttatcttttggtacaaaaataacttatacataaacacttgta 3423908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 114
Target Start/End: Original strand, 10177746 - 10177774
Alignment:
Q  86 gtttgactttattttatctttcgttataa 114  Q
    |||||||||||||||||||||||||||||    
T  10177746 gtttgactttattttatctttcgttataa 10177774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 79 - 140
Target Start/End: Original strand, 7096206 - 7096267
Alignment:
Q  79 gaaaattgtttgactttattttatctttcgttataaaaattgcttatatagaaacacttgta 140  Q
    |||||| ||||||||||||||||||||| |||||| |||| ||||||| | || ||||||||    
T  7096206 gaaaatggtttgactttattttatcttttgttatagaaatagcttatacataagcacttgta 7096267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 11615491 - 11615450
Alignment:
Q  87 tttgactttattttatctttcgttataaaaattgcttatata 128  Q
    |||||||||||||||||||| ||||||||||| |||||||||    
T  11615491 tttgactttattttatcttttgttataaaaatagcttatata 11615450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 137
Target Start/End: Original strand, 35135735 - 35135799
Alignment:
Q  73 ttataagaaaattgtttgactttattttatctttcgttataaaaattgcttatatagaaacactt 137  Q
    ||||| |||||| ||||||||||||||||||||| |||||| ||||  |||||| | ||||||||    
T  35135735 ttatatgaaaatagtttgactttattttatcttttgttatagaaatatcttatacataaacactt 35135799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 118
Target Start/End: Original strand, 37063147 - 37063192
Alignment:
Q  73 ttataagaaaattgtttgactttattttatctttcgttataaaaat 118  Q
    ||||| |||||| ||||||||||||||||||||| |||||| ||||    
T  37063147 ttatatgaaaatagtttgactttattttatcttttgttatagaaat 37063192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 73 - 126
Target Start/End: Original strand, 20192679 - 20192732
Alignment:
Q  73 ttataagaaaattgtttgactttattttatctttcgttataaaaattgcttata 126  Q
    ||||| ||||| |||||||||||||||||||||| |||||| |||| |||||||    
T  20192679 ttatatgaaaactgtttgactttattttatcttttgttatataaatagcttata 20192732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 140
Target Start/End: Original strand, 43116501 - 43116568
Alignment:
Q  73 ttataagaaaattgtttgactttattttatctttcgttataaaaattgcttatatagaaacacttgta 140  Q
    ||||| ||||||||||||| || ||||||||||| |||||| |||| ||||| | | |||||||||||    
T  43116501 ttatatgaaaattgtttgatttgattttatcttttgttatagaaatagcttacacataaacacttgta 43116568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 88 - 162
Target Start/End: Complemental strand, 41159091 - 41159017
Alignment:
Q  88 ttgactttattttatctttcgttataaaaattgcttatatagaaacacttgtacgatcagcgtttaattacgttg 162  Q
    ||||||||||||||||||| ||||||  |||  |||||| | || ||||| |||||| |||||||||||| ||||    
T  41159091 ttgactttattttatctttagttataggaataacttatacataagcacttatacgataagcgtttaattaagttg 41159017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 137
Target Start/End: Complemental strand, 45236733 - 45236687
Alignment:
Q  91 actttattttatctttcgttataaaaattgcttatatagaaacactt 137  Q
    |||||| ||||||||||||||||||||| ||||||| | ||||||||    
T  45236733 actttactttatctttcgttataaaaatagcttatacacaaacactt 45236687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 52450131 - 52450177
Alignment:
Q  79 gaaaattgtttgactttattttatctttcgttataaaaattgcttat 125  Q
    ||||| ||||||||||||||| |||||| |||||| |||||||||||    
T  52450131 gaaaactgtttgactttatttcatcttttgttatagaaattgcttat 52450177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 1395668 - 1395615
Alignment:
Q  73 ttataagaaaattgtttgactttattttatctttcgttataaaaattgcttata 126  Q
    ||||| ||||||  |||||||||||||||||||| |||||| |||| |||||||    
T  1395668 ttatatgaaaataatttgactttattttatcttttgttatagaaatagcttata 1395615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 126
Target Start/End: Original strand, 32555054 - 32555107
Alignment:
Q  73 ttataagaaaattgtttgactttattttatctttcgttataaaaattgcttata 126  Q
    ||||| ||||||  |||||||||||||||||||| ||| ||| |||||||||||    
T  32555054 ttataggaaaataatttgactttattttatcttttgttgtaataattgcttata 32555107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 126
Target Start/End: Original strand, 49586989 - 49587042
Alignment:
Q  73 ttataagaaaattgtttgactttattttatctttcgttataaaaattgcttata 126  Q
    ||||| |||||  ||||||||||||||||||||| |||||| |||| |||||||    
T  49586989 ttatatgaaaacagtttgactttattttatcttttgttatagaaatagcttata 49587042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 73 - 105
Target Start/End: Complemental strand, 54965503 - 54965471
Alignment:
Q  73 ttataagaaaattgtttgactttattttatctt 105  Q
    ||||| |||||||||||||||||||||||||||    
T  54965503 ttatatgaaaattgtttgactttattttatctt 54965471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 88 - 137
Target Start/End: Complemental strand, 4200211 - 4200162
Alignment:
Q  88 ttgactttattttatctttcgttataaaaattgcttatatagaaacactt 137  Q
    ||||||||||||||||||| |||||||||||  |||||||| ||||||||    
T  4200211 ttgactttattttatcttttgttataaaaataacttatatataaacactt 4200162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 128
Target Start/End: Original strand, 35080156 - 35080198
Alignment:
Q  86 gtttgactttattttatctttcgttataaaaattgcttatata 128  Q
    ||||||||||||||||| ||| |||||| ||||||||||||||    
T  35080156 gtttgactttattttattttttgttatagaaattgcttatata 35080198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 126
Target Start/End: Complemental strand, 1730881 - 1730836
Alignment:
Q  81 aaattgtttgactttattttatctttcgttataaaaattgcttata 126  Q
    |||| ||||||||||||||||||||| |||| |||||| |||||||    
T  1730881 aaatagtttgactttattttatctttggttaaaaaaatagcttata 1730836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 17420200 - 17420155
Alignment:
Q  73 ttataagaaaattgtttgactttattttatctttcgttataaaaat 118  Q
    ||||| |||||||||| |||||||||||||||||  ||||||||||    
T  17420200 ttatatgaaaattgttcgactttattttatcttttcttataaaaat 17420155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 42336659 - 42336614
Alignment:
Q  73 ttataagaaaattgtttgactttattttatctttcgttataaaaat 118  Q
    ||||| |||||||| ||||||||||||||| ||| |||||||||||    
T  42336659 ttatatgaaaattgcttgactttattttattttttgttataaaaat 42336614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 43420065 - 43420025
Alignment:
Q  86 gtttgactttattttatctttcgttataaaaattgcttata 126  Q
    |||||||||||||||||||||||||||  |||| |||||||    
T  43420065 gtttgactttattttatctttcgttatggaaatagcttata 43420025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 43420242 - 43420202
Alignment:
Q  86 gtttgactttattttatctttcgttataaaaattgcttata 126  Q
    |||||||||||||||||||||||||||  |||| |||||||    
T  43420242 gtttgactttattttatctttcgttatggaaatagcttata 43420202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 137
Target Start/End: Original strand, 6918252 - 6918316
Alignment:
Q  73 ttataagaaaattgtttgactttattttatctttcgttataaaaattgcttatatagaaacactt 137  Q
    |||| ||||||  |||||||||||||||||||||  ||||| |||| ||||||||| ||||||||    
T  6918252 ttattagaaaacagtttgactttattttatcttttattatataaatagcttatatacaaacactt 6918316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 137
Target Start/End: Complemental strand, 1664362 - 1664316
Alignment:
Q  91 actttattttatctttcgttataaaaattgcttatatagaaacactt 137  Q
    ||||||||||| |||| ||||||||||| ||||||||| ||||||||    
T  1664362 actttattttaccttttgttataaaaatagcttatatataaacactt 1664316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 80 - 126
Target Start/End: Original strand, 31315533 - 31315579
Alignment:
Q  80 aaaattgtttgactttattttatctttcgttataaaaattgcttata 126  Q
    ||||| |||||||||||||||||||||  |||||||||| |||||||    
T  31315533 aaaatagtttgactttattttatcttttattataaaaatagcttata 31315579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 26215493 - 26215440
Alignment:
Q  73 ttataagaaaattgtttgactttattttatctttcgttataaaaattgcttata 126  Q
    ||||| |||||| |||| |||||||||||||||| |||||| |||| |||||||    
T  26215493 ttatacgaaaatagtttaactttattttatcttttgttatagaaatagcttata 26215440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 26820196 - 26820151
Alignment:
Q  73 ttataagaaaattgtttgactttattttatctttcgttataaaaat 118  Q
    |||||| ||||| ||||||||||||||||||||| |||||| ||||    
T  26820196 ttataacaaaatagtttgactttattttatcttttgttatagaaat 26820151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 38561716 - 38561659
Alignment:
Q  80 aaaattgtttgactttattttatctttcgttataaaaattgcttatatagaaacactt 137  Q
    ||||| ||||||||||||||||||||| |||||| ||||  |||||||| | ||||||    
T  38561716 aaaatagtttgactttattttatcttttgttatataaataacttatatatagacactt 38561659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 41620378 - 41620431
Alignment:
Q  87 tttgactttattttatctttcgttataaaaattgcttatatagaaacacttgta 140  Q
    |||||||||||||||||||| |||| ||||||  |||||||| || ||||||||    
T  41620378 tttgactttattttatcttttgttacaaaaataacttatatataagcacttgta 41620431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 135
Target Start/End: Original strand, 1892302 - 1892346
Alignment:
Q  91 actttattttatctttcgttataaaaattgcttatatagaaacac 135  Q
    ||||||||||| |||| ||||||||||| ||||||||| ||||||    
T  1892302 actttattttaccttttgttataaaaatagcttatatataaacac 1892346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 34788513 - 34788553
Alignment:
Q  86 gtttgactttattttatctttcgttataaaaattgcttata 126  Q
    ||||||||||||||||||||| || |||||||| |||||||    
T  34788513 gtttgactttattttatctttggtcataaaaatagcttata 34788553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 118
Target Start/End: Original strand, 37636284 - 37636323
Alignment:
Q  79 gaaaattgtttgactttattttatctttcgttataaaaat 118  Q
    |||||||||||| ||| |||||||||||||||||||||||    
T  37636284 gaaaattgtttggcttcattttatctttcgttataaaaat 37636323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 51044545 - 51044596
Alignment:
Q  86 gtttgactttattttatctttcgttataaaaattgcttatatagaaacactt 137  Q
    ||||||||||||||||||||| |||||| |||| ||||||| | ||||||||    
T  51044545 gtttgactttattttatcttttgttatagaaatagcttatacataaacactt 51044596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 165
Target Start/End: Original strand, 24160574 - 24160660
Alignment:
Q  79 gaaaattgtttgactttattttatctttcgttataaaaattgcttatatagaaacacttgtacgatcagcgtttaattacgttgttt 165  Q
    |||||| |||||| ||||| |||||||| |||||| |||  |||||| || || ||||| || ||| |||||||||||| |||||||    
T  24160574 gaaaatagtttgaatttatattatcttttgttatagaaaaagcttatttataagcacttatatgataagcgtttaattaagttgttt 24160660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 4071879 - 4071816
Alignment:
Q  73 ttataagaaaattgtttgactttattttatctttcgttataaaaattgcttatatagaaacactt 137  Q
    ||||| ||||||  |||||||||||||||||||| |||||| |||| | ||||||| ||||||||    
T  4071879 ttatatgaaaataatttgactttattttatcttttgttatagaaatag-ttatatataaacactt 4071816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 137
Target Start/End: Complemental strand, 6803 - 6757
Alignment:
Q  91 actttattttatctttcgttataaaaattgcttatatagaaacactt 137  Q
    ||||||||||| |||| ||||||||||| ||||||||| ||||||||    
T  6803 actttattttaccttttgttataaaaatagcttatatataaacactt 6757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 126
Target Start/End: Original strand, 1147 - 1200
Alignment:
Q  73 ttataagaaaattgtttgactttattttatctttcgttataaaaattgcttata 126  Q
    ||||| || ||| ||||||||||||||||||||| |||||| |||| |||||||    
T  1147 ttatatgagaatagtttgactttattttatcttttgttatagaaatagcttata 1200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 2828 - 2775
Alignment:
Q  73 ttataagaaaattgtttgactttattttatctttcgttataaaaattgcttata 126  Q
    ||||| || ||| ||||||||||||||||||||| |||||| |||| |||||||    
T  2828 ttatatgagaatagtttgactttattttatcttttgttatagaaatagcttata 2775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University