View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13808_high_8 (Length: 554)

Name: NF13808_high_8
Description: NF13808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13808_high_8
NF13808_high_8
[»] chr4 (3 HSPs)
chr4 (213-336)||(167262-167384)
chr4 (346-525)||(2306647-2306827)
chr4 (14-97)||(167481-167564)
[»] chr8 (2 HSPs)
chr8 (344-528)||(21538084-21538269)
chr8 (344-393)||(37633313-37633362)
[»] chr7 (1 HSPs)
chr7 (344-519)||(13332658-13332834)
[»] chr1 (2 HSPs)
chr1 (344-530)||(35840678-35840875)
chr1 (450-530)||(41570406-41570487)
[»] chr6 (1 HSPs)
chr6 (344-423)||(4087928-4088006)


Alignment Details
Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 213 - 336
Target Start/End: Complemental strand, 167384 - 167262
Alignment:
Q  213 cattgtcttagtgaacataacttgattggtagagacattacaaataatttgtatgtgcaatctcgaattcattctccacttattaatctcagtgtggtga 312  Q
    ||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||| |||||    
T  167384 cattgtcctagtgaacataactcgattgatagagacattacaaataatttgtatgtgcaatctcgaattcattctccacttattaacct-tgtgcggtga 167286  T
Q  313 atatttagtcattaatcacttgat 336  Q
    ||||||||||||||||||||||||    
T  167285 atatttagtcattaatcacttgat 167262  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 346 - 525
Target Start/End: Original strand, 2306647 - 2306827
Alignment:
Q  346 gaaatgccatttcccacgaaactgaatctacgggaaatacgaattacattataccatggcgtgtattccaccaaatgctacnnnnnnnnnnnnnnnnnnn 445  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||| ||||| || |||||||||||||||||||| ||                       
T  2306647 gaaatgccatttcccacgaaactgaatccacggaaaatacgaattacactatacgatagcgtgtattccaccaaatgcaacttcttttgttttttatttt 2306746  T
Q  446 natattaaaataatgtttgtgaaaatca-tttagtacaattcgtggttttggtttattttcattcgtggttaatagcattg 525  Q
     ||||||||||||||||||||||||||| ||||||| |||||||| |||| ||||| |||||||||||| |||||||||||    
T  2306747 tatattaaaataatgtttgtgaaaatcactttagtagaattcgtgattttcgtttactttcattcgtggataatagcattg 2306827  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 14 - 97
Target Start/End: Complemental strand, 167564 - 167481
Alignment:
Q  14 gcatagggtggaaaaagtaatagcataannnnnnnngttatattatgaagaatattatccattcagtgacgcataaaatgtcat 97  Q
    ||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||   |||||||||||||    
T  167564 gcatagggtggaaaaagtaatagcataattttttttgttatattatgaagaatattatccattcagtggtccataaaatgtcat 167481  T

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Target: chr8 (Bit Score: 86; Significance: 7e-41; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 344 - 528
Target Start/End: Complemental strand, 21538269 - 21538084
Alignment:
Q  344 gggaaatgccatttcccacgaaactgaatctacgggaaatacgaattacattataccatggcgtgtattccaccaaatgctacnnnnnnnnnnnnnnnnn 443  Q
    ||||||| |||||||||||||||||||||| |||| |||||||||||||| |||||  |||||||||||||||||||||||||                     
T  21538269 gggaaataccatttcccacgaaactgaatccacggaaaatacgaattacaatatacgctggcgtgtattccaccaaatgctactttttttgttttttatt 21538170  T
Q  444 nnnatattaaaataatgtttgtgaaaatca-tttagtacaattcgtggttttggtttattttcattcgtggttaatagcattgctg 528  Q
       ||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21538169 tttatattaaaataatatttgtgaaaatcactttagtacaattcgtggttttcgtttattttcattcgtggttaatagcattgctg 21538084  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 393
Target Start/End: Original strand, 37633313 - 37633362
Alignment:
Q  344 gggaaatgccatttcccacgaaactgaatctacgggaaatacgaattaca 393  Q
    |||||||||||| ||| |||||| |||||  |||||||||||||||||||    
T  37633313 gggaaatgccatatcctacgaaagtgaattcacgggaaatacgaattaca 37633362  T

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Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 344 - 519
Target Start/End: Complemental strand, 13332834 - 13332658
Alignment:
Q  344 gggaaatgccatttcccacgaaactgaatctacgggaaatacgaattacattataccatggcgtgtattccaccaaatgctacnnnnnnnnnnnnnnnnn 443  Q
    |||||||||||||||||||||||||||||| |||| |||||||||||||| ||||| ||||| ||||||||||||||||||||                     
T  13332834 gggaaatgccatttcccacgaaactgaatccacggaaaatacgaattacactatacgatggcttgtattccaccaaatgctactttttttgttttttatt 13332735  T
Q  444 nnnatattaaaataatgtttgtgaaaatca-tttagtacaattcgtggttttggtttattttcattcgtggttaata 519  Q
       ||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||| ||||||||||||||    
T  13332734 tttatattaaaataatgtttgtgaaaatcactttagtacaatttgtggttttcgtttattttaattcgtggttaata 13332658  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 344 - 530
Target Start/End: Complemental strand, 35840875 - 35840678
Alignment:
Q  344 gggaaatgcc-atttcccacgaaactgaatctacgggaaatacgaattacattataccatggcgtgtattccaccaaatgctacnnnnnnnnnnnnnnnn 442  Q
    |||||||||| |||||||||||||||||||| |||| |||||||||||| | ||||| ||||| ||||||||||| ||||||||                    
T  35840875 gggaaatgcccatttcccacgaaactgaatccacggaaaatacgaattatactatacgatggcatgtattccaccgaatgctacattttattttttttta 35840776  T
Q  443 nnnn-atattaaaataatgtttgtgaaaatca---------tttagtacaattcgtggttttggtttattttcattcgtggttaatagcattgctgat 530  Q
         ||||||||| |||||||||||||||||         ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  35840775 tttttatattaaaaaaatgtttgtgaaaatcactttttcactttagtacaattcatggttttcgtttattttcattcgtggttaatagcattgctgat 35840678  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 450 - 530
Target Start/End: Complemental strand, 41570487 - 41570406
Alignment:
Q  450 ttaaaataatgtttgtgaaaatca-tttagtacaattcgtggttttggtttattttcattcgtggttaatagcattgctgat 530  Q
    |||||||||||||||||||||||| ||||| ||| || || ||||| |||| |||  ||||||||| |||||||||||||||    
T  41570487 ttaaaataatgtttgtgaaaatcactttagcacagtttgtcgttttcgtttgtttctattcgtggtgaatagcattgctgat 41570406  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 344 - 423
Target Start/End: Original strand, 4087928 - 4088006
Alignment:
Q  344 gggaaatgccatttcccacgaaactgaatctacgggaaatacgaattacattataccatggcgtgtattccaccaaatgc 423  Q
    |||||||  ||||||| || ||||||| || | |||||||||||||||||  |||| |||||||||||||||||||||||    
T  4087928 gggaaatatcatttcctactaaactga-tccaagggaaatacgaattacacaatacgatggcgtgtattccaccaaatgc 4088006  T

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