View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13808_low_13 (Length: 481)
Name: NF13808_low_13
Description: NF13808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13808_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 372; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 18 - 466
Target Start/End: Complemental strand, 34217663 - 34217217
Alignment:
| Q |
18 |
aaaagaaatttcaacaaaccatgcatcatcatcattatttccctgtaatcaattcataggaaccataatgaatatacattgaaaagaatatacaataaga |
117 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34217663 |
aaaagaaatttcaaaaaaccatgcatcatcatcattatttccctgtaatcaattcatgggaaccataatgaatatacattgaaaagaatatacaataaga |
34217564 |
T |
|
| Q |
118 |
tgatatgaattatagcaataatcactta----gtcttacnnnnnnnggcgctgttagtatcttcatttaaaaaccataagaaatctggaaaagttaattc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||| |
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|
| T |
34217563 |
tgatatgaattatagcaataatcacttaattagtcttacattttttggtgctgttagtatcttcatttaaaaaccataaaaaatctagaaaagttaattc |
34217464 |
T |
|
| Q |
214 |
acaacagagccaagtcgtttatagctatcaataagggcatggtttgaaatcacatacattattaatattctgcataaatgtaaaagccaagctacaggta |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34217463 |
acaacagagccaagtcgtttatagctatcaataagggcatggtttgaaatcacatacattattaatattctgcataaatgtaaaagccaagctacaggta |
34217364 |
T |
|
| Q |
314 |
catttacattgtgtagattgtaatactgaagtaaaatttcgggtgcaattggtacatttacatttacatttacatgtgttggtgttgtatttttgtcgga |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
34217363 |
catttacattgtgtagattgtaatactgaagtaaaatttcgggtgcaattggtacatttacattt------acatgtgttggtgttgtatttttgtcgga |
34217270 |
T |
|
| Q |
414 |
catgggacatgcctttagttggtgctaaagagataaggtgagaccccatctgt |
466 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34217269 |
catgggacatgcctttagttggtgctaaagagataaggtgagaccccatctgt |
34217217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 170 - 314
Target Start/End: Complemental strand, 10242292 - 10242146
Alignment:
| Q |
170 |
gtatcttcatttaaaaaccataagaaatctggaaaagttaattcacaacagagccaagtcgtttatagctatcaataagggcatggtttgaaatcac--a |
267 |
Q |
| |
|
||||||| ||||||||| ||||| || | ||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||| |||||| | |
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|
| T |
10242292 |
gtatcttaatttaaaaaacataacaattttggaaaagttaattcacaacagattcaagtcatttatagctatcaataagggcatagtttggaatcacata |
10242193 |
T |
|
| Q |
268 |
tacattattaatattctgcataaatgtaaaagccaagctacaggtac |
314 |
Q |
| |
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|| ||||||| || ||||||||||||| |||| |||||||||||||| |
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| T |
10242192 |
tatattattagtactctgcataaatgttaaaggcaagctacaggtac |
10242146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 325 - 378
Target Start/End: Complemental strand, 10241838 - 10241785
Alignment:
| Q |
325 |
tgtagattgtaatactgaagtaaaatttcgggtgcaattggtacatttacattt |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10241838 |
tgtagattgtaatactgaagtaaaatttcgggtgcagttggtacatttacattt |
10241785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 379
Target Start/End: Original strand, 2683090 - 2683451
Alignment:
| Q |
18 |
aaaagaaatttcaacaaaccatgcatcatcatcattatttccctgtaatcaattcataggaaccataatgaatatacattgaaaagaatatacaataaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2683090 |
aaaagaaatttcaacaaaccatgcatcatcatcattatttccctgtaatcaattcataggcaccataatgaatatacattgaaaagaatatacaataaga |
2683189 |
T |
|
| Q |
118 |
tgatatgaattatagcaataatcacttagtcttacnnnnnnnggcgctgttagtatcttcatttaaaaaccataagaaatctggaaaagttaattcacaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2683190 |
tgatatgaattatagcaataatcacttagtcttacattttttggtgttgttagtatcttcatttaaaaaccataagaaatctggaaaagttaattcacaa |
2683289 |
T |
|
| Q |
218 |
cagagccaagtcgtttatagctatcaataagggcatggtttgaaatcacatacattattaatattctgcataaatgtaaaagccaagctacaggtacatt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2683290 |
cagagccaagtcgtttatagctatcaataagggcatggtttgaaatcacatacattattaatattctgcataaatgtaaaagccaagctacaggtacatt |
2683389 |
T |
|
| Q |
318 |
tacattgtgtagattgtaatactgaagtaaaatttcgggtgcaattggtacatttacattta |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
2683390 |
tacattgtgtagattgtaatactgaagtaaaatttcgggtgcagttggtacatttacattta |
2683451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 464
Target Start/End: Original strand, 9684650 - 9684729
Alignment:
| Q |
385 |
acatgtgttggtgttgtatttttgtcggacatgggacatgcctttagttggtgctaaagagataaggtgagaccccatct |
464 |
Q |
| |
|
||||||||||||||||||||| |||| |||| |||| |||||| || ||||| ||| ||||||||||||||||||| |
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|
| T |
9684650 |
acatgtgttggtgttgtatttgtgtcagacacaagacacgcctttggtcggtgcatcagatataaggtgagaccccatct |
9684729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 378
Target Start/End: Complemental strand, 5480221 - 5479861
Alignment:
| Q |
18 |
aaaagaaatttcaacaaaccatgcatcatcatcattatttccctgtaatcaattcataggaaccataatgaatatacattgaaaagaatatacaataaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5480221 |
aaaagaaatttcaacaaaccatgcatcatcatcattatttccctgtaatcaattcataggcaccataatgaatatacattgaaaagaatatacaataaga |
5480122 |
T |
|
| Q |
118 |
tgatatgaattatagcaataatcacttagtcttacnnnnnnnggcgctgttagtatcttcatttaaaaaccataagaaatctggaaaagttaattcacaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5480121 |
tgatatgaattatagcaataatcacttagtcttacattttttggtgttgttagtatcttcatttaaaaaccataagaaatctggaaaagttaattcacaa |
5480022 |
T |
|
| Q |
218 |
cagagccaagtcgtttatagctatcaataagggcatggtttgaaatcacatacattattaatattctgcataaatgtaaaagccaagctacaggtacatt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5480021 |
cagagccaagtcgtttatagctatcaataagggcatggtttgaaatcacatacattattaatattctgcataaatgtaaaagccaagctacaggtacatt |
5479922 |
T |
|
| Q |
318 |
tacattgtgtagattgtaatactgaagtaaaatttcgggtgcaattggtacatttacattt |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5479921 |
tacattgtgtagattgtaatactgaagtaaaatttcgggtgcagttggtacatttacattt |
5479861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 378
Target Start/End: Original strand, 45006516 - 45006876
Alignment:
| Q |
18 |
aaaagaaatttcaacaaaccatgcatcatcatcattatttccctgtaatcaattcataggaaccataatgaatatacattgaaaagaatatacaataaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45006516 |
aaaagaaatttcaacaaaccatgcatcatcatcattatttccctgtaatcaattcataggcaccataatgaatatacattgaaaagaatatacaataaga |
45006615 |
T |
|
| Q |
118 |
tgatatgaattatagcaataatcacttagtcttacnnnnnnnggcgctgttagtatcttcatttaaaaaccataagaaatctggaaaagttaattcacaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45006616 |
tgatatgaattatagcaataatcacttagtcttacattttttggtgttgttagtatcttcatttaaaaaccataagaaatctggaaaagttaattcacaa |
45006715 |
T |
|
| Q |
218 |
cagagccaagtcgtttatagctatcaataagggcatggtttgaaatcacatacattattaatattctgcataaatgtaaaagccaagctacaggtacatt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45006716 |
cagagccaagtcgtttatagctatcaataagggcatggtttgaaatcacatacattattaatattctgcataaatgtaaaagccaagctacaggtacatt |
45006815 |
T |
|
| Q |
318 |
tacattgtgtagattgtaatactgaagtaaaatttcgggtgcaattggtacatttacattt |
378 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
45006816 |
tacattgtgtagaatgtaatactgaagtaaaatttcgggtgcagttggtacatttacattt |
45006876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 277 - 378
Target Start/End: Complemental strand, 25575658 - 25575557
Alignment:
| Q |
277 |
aatattctgcataaatgtaaaagccaagctacaggtacatttacattgtgtagattgtaatactgaagtaaaatttcgggtgcaattggtacatttacat |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25575658 |
aatattctgcataaatgtaaaagccaagctataggtacatttaaattgtttagattgtaatagtgaagtaaaatttcgggtgcagttggtacatttacat |
25575559 |
T |
|
| Q |
377 |
tt |
378 |
Q |
| |
|
|| |
|
|
| T |
25575558 |
tt |
25575557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 5421234 - 5421368
Alignment:
| Q |
18 |
aaaagaaatttcaacaaaccatgcatcatcatcattatttccctgtaatcaattcataggaaccataatgaatatacattgaaaagaatatacaataaga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
5421234 |
aaaagaaatttcaacaaaccatgcatcatcatcatcatttccctgtagtcaatacataggaaccataatgaatatacattgaaaaaaatatacaataata |
5421333 |
T |
|
| Q |
118 |
tgatatgaattatagcaataatcacttagtcttac |
152 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||| |
|
|
| T |
5421334 |
tgatatgaattatagcaataattagttagtcttac |
5421368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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