View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13808_low_15 (Length: 456)
Name: NF13808_low_15
Description: NF13808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13808_low_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 8 - 442
Target Start/End: Complemental strand, 33824717 - 33824283
Alignment:
| Q |
8 |
gagcagaacctgtgctactatgtaatggtaaaagaagatttgaccggtcaacaaaagaaaaagaacacgtagttacacttattactgatattgggtttga |
107 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33824717 |
gagcaaaacctatgctactatgtaatggtaaaagaagatttgaccggtcaacaaaagaaaaagaacacgtagttacacttattactgatattgggtttga |
33824618 |
T |
|
| Q |
108 |
attgcaccattggtagttggaagatcagaccaagtaagggttggaattggattccagtaccctaattcaccaccagtaactgaagttgtctccaaaatgt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33824617 |
attgcaccattggtagttggaagatcagaccaagtaagggttggaattggattccagtaccctaattcaccaccagtaactgaagttgtctccaaaatgt |
33824518 |
T |
|
| Q |
208 |
tggatatagacgaagaatttgaagccgcgttccctagtaataccgttggtgaagatgaaatatcaccaacactgttactagggaaagttgttgatgacct |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33824517 |
tggatatagacgaagaatttgaagccgcgttccctagtaataccgttggtgaagatgaaatatcaccaacactgttactagggaaagttgttgatgacct |
33824418 |
T |
|
| Q |
308 |
tagtttctggtacagttcttggattccactgttttgatgatgctgatgttgttgatccccaagtacaaatccaccattttgtaattgttgagtttgatta |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33824417 |
tagtttctggtacagttcttggattccactgttttgatgatgctgatgttgttgatccccaagtacaaatccaccattttgtaattgttgagtttgatta |
33824318 |
T |
|
| Q |
408 |
tcatgattgtttctccaaaatgggttgcataaaac |
442 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
33824317 |
tcatgattgtttctccaaaatgggttgcataaaac |
33824283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University