View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13808_low_17 (Length: 445)

Name: NF13808_low_17
Description: NF13808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13808_low_17
NF13808_low_17
[»] chr5 (21 HSPs)
chr5 (1-253)||(3299482-3299734)
chr5 (1-253)||(3392375-3392627)
chr5 (311-443)||(3299292-3299424)
chr5 (311-443)||(3392185-3392317)
chr5 (118-253)||(1849914-1850049)
chr5 (118-253)||(1163690-1163822)
chr5 (115-253)||(39879763-39879898)
chr5 (115-253)||(40418232-40418367)
chr5 (115-253)||(38987654-38987789)
chr5 (115-253)||(39726367-39726502)
chr5 (115-253)||(39168795-39168930)
chr5 (115-252)||(39399809-39399943)
chr5 (1-96)||(40418404-40418496)
chr5 (1-96)||(38987826-38987918)
chr5 (1-96)||(39726545-39726637)
chr5 (1-96)||(39879941-39880033)
chr5 (1-83)||(1163594-1163676)
chr5 (1-83)||(1850063-1850145)
chr5 (382-443)||(1163942-1164003)
chr5 (383-443)||(1849763-1849823)
chr5 (368-445)||(39168693-39168770)
[»] chr4 (4 HSPs)
chr4 (115-253)||(25912292-25912427)
chr4 (1-96)||(25912160-25912252)
chr4 (121-187)||(44444772-44444838)
chr4 (387-445)||(25912528-25912586)


Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 3299734 - 3299482
Alignment:
Q  1 ataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttgggcataactaatcttggtgatcaaaatggcagcaggaaggtttgta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  3299734 ataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttcggcataactaattttggtgatcaaaatggcagcaggaaggtttgta 3299635  T
Q  101 tctactcctccagaagacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299634 tctactcctccagaagacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattat 3299535  T
Q  201 ttccaatatctttcacacgagcaaccatggcatcagctaaacgatattttttg 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299534 ttccaatatctttcacacgagcaaccatggcatcagctaaacgatattttttg 3299482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 3392627 - 3392375
Alignment:
Q  1 ataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttgggcataactaatcttggtgatcaaaatggcagcaggaaggtttgta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  3392627 ataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttcggcataactaattttggtgatcaaaatggcagcaggaaggtttgta 3392528  T
Q  101 tctactcctccagaagacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392527 tctactcctccagaagacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattat 3392428  T
Q  201 ttccaatatctttcacacgagcaaccatggcatcagctaaacgatattttttg 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392427 ttccaatatctttcacacgagcaaccatggcatcagctaaacgatattttttg 3392375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 311 - 443
Target Start/End: Complemental strand, 3299424 - 3299292
Alignment:
Q  311 tacaactcaataatcagcttcttcttctctttattctcctccaccaactcctctaattcctccttgaggttaataccaagaacaacatattccactaact 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3299424 tacaactcaataatcagcttcttcttctctttattctcctccaccaactcctctaattcctccttgaggttaataccgagaacaacatattccactaact 3299325  T
Q  411 gaggcctagagaatgaaggagtgaagggtgcat 443  Q
    ||||||||||||||||||| |||||||||||||    
T  3299324 gaggcctagagaatgaaggcgtgaagggtgcat 3299292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 311 - 443
Target Start/End: Complemental strand, 3392317 - 3392185
Alignment:
Q  311 tacaactcaataatcagcttcttcttctctttattctcctccaccaactcctctaattcctccttgaggttaataccaagaacaacatattccactaact 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3392317 tacaactcaataatcagcttcttcttctctttattctcctccaccaactcctctaattcctccttgaggttaataccgagaacaacatattccactaact 3392218  T
Q  411 gaggcctagagaatgaaggagtgaagggtgcat 443  Q
    ||||||||||||||||||| |||||||||||||    
T  3392217 gaggcctagagaatgaaggcgtgaagggtgcat 3392185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 118 - 253
Target Start/End: Complemental strand, 1850049 - 1849914
Alignment:
Q  118 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcaca 217  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1850049 caggtcataaccaagagcatggtcaccaggttttaaaatacgactaagatgagtcctgatttgaaaagttgtgtgattattatttccaatatctttcaca 1849950  T
Q  218 cgagcaaccatggcatcagctaaacgatattttttg 253  Q
    |||||||| ||||||| |||||||||||||||||||    
T  1849949 cgagcaactatggcattagctaaacgatattttttg 1849914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 118 - 253
Target Start/End: Original strand, 1163690 - 1163822
Alignment:
Q  118 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcaca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||   |||||||||||||||||||||||||| |||    
T  1163690 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaa---gtgtgattattatttccaatatctttgaca 1163786  T
Q  218 cgagcaaccatggcatcagctaaacgatattttttg 253  Q
    |||||||| ||||||| |||||||||||||||||||    
T  1163787 cgagcaactatggcattagctaaacgatattttttg 1163822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 115 - 253
Target Start/End: Complemental strand, 39879898 - 39879763
Alignment:
Q  115 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||   | |||||||||| ||||||||    
T  39879898 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccagtatctttc 39879802  T
Q  215 acacgagcaaccatggcatcagctaaacgatattttttg 253  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  39879801 acacgagcaaccacagcatcagctaaacgatattttttg 39879763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 115 - 253
Target Start/End: Complemental strand, 40418367 - 40418232
Alignment:
Q  115 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||   | |||||||||||||||||||    
T  40418367 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccaatatctttc 40418271  T
Q  215 acacgagcaaccatggcatcagctaaacgatattttttg 253  Q
    |||||||||||||  ||||||||||||| ||||||||||    
T  40418270 acacgagcaaccacagcatcagctaaacaatattttttg 40418232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 115 - 253
Target Start/End: Complemental strand, 38987789 - 38987654
Alignment:
Q  115 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 214  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||   | |||||||||| ||||||||    
T  38987789 agacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg---tcattatttccagtatctttc 38987693  T
Q  215 acacgagcaaccatggcatcagctaaacgatattttttg 253  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  38987692 acacgagcaaccacagcatcagctaaacgatattttttg 38987654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 115 - 253
Target Start/End: Complemental strand, 39726502 - 39726367
Alignment:
Q  115 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 214  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||   | |||||||||| ||||||||    
T  39726502 agacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg---tcattatttccagtatctttc 39726406  T
Q  215 acacgagcaaccatggcatcagctaaacgatattttttg 253  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  39726405 acacgagcaaccacagcatcagctaaacgatattttttg 39726367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 115 - 253
Target Start/End: Complemental strand, 39168930 - 39168795
Alignment:
Q  115 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 214  Q
    ||||| ||||||||||||||||| |||||||| |||||||||| |||| |||||||| ||||||||||||||||||   | ||||||||||| ||||| |    
T  39168930 agacaagtcataaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgatttgaaaagttgtg---tcattatttccaaaatcttcc 39168834  T
Q  215 acacgagcaaccatggcatcagctaaacgatattttttg 253  Q
    ||||||||||||| |||||||||||| ||||||||||||    
T  39168833 acacgagcaaccacggcatcagctaaccgatattttttg 39168795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 115 - 252
Target Start/End: Complemental strand, 39399943 - 39399809
Alignment:
Q  115 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 214  Q
    ||||| ||||||||||||||||| |||||||| |||||||||| |||||||||||||| |||||||||||||||||   | ||||||||||| || || |    
T  39399943 agacaagtcataaccaagagcatagtcaccggattttaaaatatgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccaaaattttcc 39399847  T
Q  215 acacgagcaaccatggcatcagctaaacgatatttttt 252  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  39399846 acacgagcaaccacggcatcagctaaacggtatttttt 39399809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 40418496 - 40418404
Alignment:
Q  1 ataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttgggcataactaatcttggtgatcaaaatggcagcaggaaggtt 96  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||| ||   ||||||||||||||||||||||||||||||||||||||||||    
T  40418496 ataatcagattcccacttatcatgaagagcaacaactctaccattctcttc---ggcataactaatcttggtgatcaaaatggcagcaggaaggtt 40418404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 38987918 - 38987826
Alignment:
Q  1 ataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttgggcataactaatcttggtgatcaaaatggcagcaggaaggtt 96  Q
    |||||||||||||||||||||||  ||||||||||||||||||||| | ||   |||||||||||||||| |||||||||||||||||||||||||    
T  38987918 ataatcagattcccacttatccttgacagcaacaactctaccattcacttc---ggcataactaatcttgctgatcaaaatggcagcaggaaggtt 38987826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 39726637 - 39726545
Alignment:
Q  1 ataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttgggcataactaatcttggtgatcaaaatggcagcaggaaggtt 96  Q
    |||||||||||||||||||||||  ||||||||||||||||||||| | ||   |||||||||||||||| |||||||||||||||||||||||||    
T  39726637 ataatcagattcccacttatccttgacagcaacaactctaccattcacttc---ggcataactaatcttgctgatcaaaatggcagcaggaaggtt 39726545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 39880033 - 39879941
Alignment:
Q  1 ataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttgggcataactaatcttggtgatcaaaatggcagcaggaaggtt 96  Q
    |||||||||||||||||||||||  ||||||||||||||||||||| | ||   |||||||||||||||| |||||||||||||||||||||||||    
T  39880033 ataatcagattcccacttatccttgacagcaacaactctaccattcacttc---ggcataactaatcttgctgatcaaaatggcagcaggaaggtt 39879941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 1163594 - 1163676
Alignment:
Q  1 ataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttgggcataactaatcttggtgatcaaaatgg 83  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||  ||| ||||||||||||| ||||||||||    
T  1163594 ataaccagattcccacttatcctgaacaggaacaactctaccattctcctctttagcaaaactaatcttggtaatcaaaatgg 1163676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 1850145 - 1850063
Alignment:
Q  1 ataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttgggcataactaatcttggtgatcaaaatgg 83  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||||||  ||| ||||||||||||| ||||||||||    
T  1850145 ataatcagattcccacttatcctgaacaggaataactctaccattctcctctttagcaaaactaatcttggtaatcaaaatgg 1850063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 382 - 443
Target Start/End: Original strand, 1163942 - 1164003
Alignment:
Q  382 aataccaagaacaacatattccactaactgaggcctagagaatgaaggagtgaagggtgcat 443  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  1163942 aataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcat 1164003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 383 - 443
Target Start/End: Complemental strand, 1849823 - 1849763
Alignment:
Q  383 ataccaagaacaacatattccactaactgaggcctagagaatgaaggagtgaagggtgcat 443  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  1849823 ataccgagaacaacatattccactaactgatgcctagagaatgaaggcgtgaagggtgcat 1849763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 368 - 445
Target Start/End: Complemental strand, 39168770 - 39168693
Alignment:
Q  368 tcctccttgaggttaataccaagaacaacatattccactaactgaggcctagagaatgaaggagtgaagggtgcattc 445  Q
    ||||||| ||||  |||| ||||||||||||||| ||||||||||| ||||| ||||||| | |||||||||||||||    
T  39168770 tcctcctggaggacaatatcaagaacaacatatttcactaactgagtcctagtgaatgaatgcgtgaagggtgcattc 39168693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 2e-47; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 115 - 253
Target Start/End: Original strand, 25912292 - 25912427
Alignment:
Q  115 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 214  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||   | |||||||||||||||||||    
T  25912292 agacaggtcataaccaagagcatggtcatcgggttttagaatacgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccaatatctttc 25912388  T
Q  215 acacgagcaaccatggcatcagctaaacgatattttttg 253  Q
    |||||||||||||   |||||||||||||||||||||||    
T  25912389 acacgagcaaccacatcatcagctaaacgatattttttg 25912427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 25912160 - 25912252
Alignment:
Q  1 ataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttgggcataactaatcttggtgatcaaaatggcagcaggaaggtt 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||   ||||| |||||||||||||||||||||||||||||||||| |||||||    
T  25912160 ataatcagattcccacttatcctgaacagcaacaactctaccatt---ctcttcggcataactaatcttggtgatcaaaatggcagcatgaaggtt 25912252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 121 - 187
Target Start/End: Original strand, 44444772 - 44444838
Alignment:
Q  121 gtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagtt 187  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  44444772 gtcataaccaagagcatagtcaccaggttttaaaatacgaccaagatgagtcttgatttgaaaagtt 44444838  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 387 - 445
Target Start/End: Original strand, 25912528 - 25912586
Alignment:
Q  387 caagaacaacatattccactaactgaggcctagagaatgaaggagtgaagggtgcattc 445  Q
    ||||||||| |||||| |||||||||||||||| |||| |||| |||||||||||||||    
T  25912528 caagaacaatatattcaactaactgaggcctagtgaattaaggcgtgaagggtgcattc 25912586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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