View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13808_low_18 (Length: 430)
Name: NF13808_low_18
Description: NF13808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13808_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 17 - 411
Target Start/End: Original strand, 44198698 - 44199089
Alignment:
| Q |
17 |
atcaacacctgaggaggaaaataaatttgagnnnnnnncaacacatttaatttctctccatttttgggttaagggtaagggcatcattgtcaccatgtac |
116 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
44198698 |
atcagcacctgaggaggaaaataaatttgagaaaaaaacaacacatttaatttctctctatttttgggttaagggtaagggcatcattgtcaccatgtac |
44198797 |
T |
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| Q |
117 |
cccatcacctctatatatactcactttcccacaatcatgtttctcacttcatctttataaatctttctaagtttcttctatatggtactatgttttattg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
44198798 |
cccatcacctctatatatactcactttcccacaatcatgtttctcacttcatctttataaatctttctaagtttct---atatggtactatgttttattg |
44198894 |
T |
|
| Q |
217 |
caaagtaccaacaacaccatattcctagttagtacatatattcactatttaaaacctttcttgcacactattcaatatgccttcactctcagaagcttat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
44198895 |
caaagtaccaacaacaccatattcctagttagtacatatattcactatttaaaacctttcttgcacactattcaatatgccttcactctcagaagcctac |
44198994 |
T |
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| Q |
317 |
agagctcaccctgtgcatgttaaccacaagcaccctgatttcaattcactacaagaacttcctgaatcttacacttggaaccaccttgatgatca |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44198995 |
agagctcaccctgtgcatgttaaccacaagcaccctgatttcaattcactacaagaacttcctgaatcttacacttggaaccaccttgatgatca |
44199089 |
T |
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