View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13808_low_2 (Length: 998)
Name: NF13808_low_2
Description: NF13808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13808_low_2 |
 | |
|
| [»] scaffold0061 (1 HSPs) |
| | |
|
| [»] scaffold0017 (1 HSPs) |
| | |
|
| [»] scaffold0567 (1 HSPs) |
| | |
|
| [»] scaffold0490 (1 HSPs) |
| | |
|
| [»] scaffold0125 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 916; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 916; E-Value: 0
Query Start/End: Original strand, 14 - 965
Target Start/End: Complemental strand, 34216825 - 34215874
Alignment:
| Q |
14 |
gatctccttcgtctctcccaatggacgaaggattttaattagtattcacagaagcagactcacgcttctatctggatctgtttggttgacttaccgcaag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
34216825 |
gatctccttcgtctctcccaatggacgaaggattttaattagtattcacagaagcagactcacgcttctatctggatccgtttggttgacttaccgcaag |
34216726 |
T |
|
| Q |
114 |
aatattggcgggaacaaacattgaaggaaatatatctctgttgcaagaacagacactctcttctacaccacttaatgatgtttctgccaactctttcagc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34216725 |
aatattggcgggaacaaacattgaaggaaatatgtctctgttgcaagaacagacactctcttctacaccacttaatgatgtttctgccaactctttcagc |
34216626 |
T |
|
| Q |
214 |
ttgacattgcagaatgttacagatgaaattccacagggaaggtttcctcactccgctagtcccgagttggaattggtttccgaggtagcacacgatgacg |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34216625 |
ttgacattgcagaatgttacagatgaaattccacagggaaggtttcctcactccgctagtcccgagttggaattggtttccgaggtagcacacgatgacg |
34216526 |
T |
|
| Q |
314 |
tgcattcacagggagtagagaaaatgccacaggattctcggaacgtaagagttcttgggacttctgtcgctgctgttcggctcccctcttcagttgagca |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34216525 |
tgcattcacagggagtagagaaaatgccacaggattctcggaacgtaagagttcttgggacttctgtcgctgccgttcggctcccctcttcagttgagca |
34216426 |
T |
|
| Q |
414 |
cgtcaacgtgcatgagaactctgagtttactgtttctgcttctgttacggagatgagtccctcgcttgcccaactcagtaaatcacaaacggatgtttcc |
513 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34216425 |
cgtcaacgtgcatgagaactctgagtttactgtttctgcttctgttaaggagatgagtccctcgcttgcccaactcagtaaatcacaaacggatgtttcc |
34216326 |
T |
|
| Q |
514 |
accaattcgttcaaccttgccttgcaatatgttatagatgaaattccaaagggaaggttgcctcagctcactagccccgtgttggatttggttactgcag |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34216325 |
accaattcgttcaaccttgccttgcaatatgttatagatgaaattccaaagggaaggttgcctcagctcactagccccgtgttggatttggttactgcag |
34216226 |
T |
|
| Q |
614 |
tagcatacgatgacgtgcattcaaatgtagtggagcaaacactttcaggattctcaggacacgagcgttctagagacttctgtagctgctgttccgctta |
713 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34216225 |
tagcatacgatgacgtgcattcaaatgtagtggagcaaacactttcaggattctcaggacacgagcgttctagagacttctgtagctgctgttccgctta |
34216126 |
T |
|
| Q |
714 |
ccttttcaatagagcacgttgtcgtgcatgagaacgccgagttagctctctccgcttctgttaggtagatgagtccctcgctggcccagatcaatgaatc |
813 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34216125 |
ccttttcaatagagcacgttgacgtgcatgagaatgccgagttagctctctccgcttctgttaggtagatgagtccctcgctggcccagatcaatgaatc |
34216026 |
T |
|
| Q |
814 |
gcaatctaaggtgcatacaggttcgccccgcctgcactcacaagccaaagtttctgttgtttcggccattgcttcttctaatcagctcgcggtttagttt |
913 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34216025 |
gcaatctaaggtgcatacaggttcgccccgcctgcactcacaagccaaaatttctgttgtttcggccattgcttcttctaaacagctcgcggtttagttt |
34215926 |
T |
|
| Q |
914 |
gaaattctggcggatccggttgttcagtaggttaatggtaacacaggttctg |
965 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
34215925 |
gaaattctggcggatccggtagttcagtaggttaatggtaacacaggttctg |
34215874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 14385482 - 14385448
Alignment:
| Q |
17 |
ctccttcgtctctcccaatggacgaaggattttaa |
51 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |
|
|
| T |
14385482 |
ctccttcgcctctcccaatggacgaaggattttaa |
14385448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 2e-76; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 676 - 965
Target Start/End: Original strand, 11212583 - 11212867
Alignment:
| Q |
676 |
gagcgttctagagacttctgtagctgctgttccgcttaccttttcaatagagcacgttgtcgtgcatgagaacgccgagttagctctctccgcttctgtt |
775 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| | ||||| ||||| || ||||||||||| ||||||||||||||| |||| |
|
|
| T |
11212583 |
gagcgttctagagacttctgtagctgctgttccgcttatctttttagtagagtgcgttgacgcacatgagaacgc-----tagctctctccgcttatgtt |
11212677 |
T |
|
| Q |
776 |
aggtagatgagtccctcgctggcccagatcaatgaatcgcaatctaaggtgcatacaggttcgccccgcctgcactcacaagccaaagtttctgttgttt |
875 |
Q |
| |
|
||| ||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
11212678 |
agggagatgagtccctcgccaacccagatcaatgaatctcaatctgaggtgcatacaggttcgccccacctgcactcacaagccaaagtttctgctgttt |
11212777 |
T |
|
| Q |
876 |
cggccattgcttcttctaatcagctcgcggtttagtttgaaattctggcggatccggttgttcagtaggttaatggtaacacaggttctg |
965 |
Q |
| |
|
||||||||||| ||||| | |||||||| || ||| |||||||||||| | || ||| |||||| ||| |||||||||| ||||||||| |
|
|
| T |
11212778 |
cggccattgctacttctgagtagctcgcgattcagtctgaaattctggcagctctggtagttcagcaggctaatggtaacgcaggttctg |
11212867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 780 - 965
Target Start/End: Original strand, 18485088 - 18485273
Alignment:
| Q |
780 |
agatgagtccctcgctggcccagatcaatgaatcgcaatctaaggtgcatacaggttcgccccgcctgcactcacaagccaaagtttctgttgtttcggc |
879 |
Q |
| |
|
||||||| |||||||| |||||| |||||||||| |||||| ||||||||||| |||| |||| ||||||||||||||||||| |||||| |||| |||| |
|
|
| T |
18485088 |
agatgagcccctcgcttgcccagctcaatgaatcacaatctgaggtgcatacatgttcaccccacctgcactcacaagccaaaatttctgctgttacggc |
18485187 |
T |
|
| Q |
880 |
cattgcttcttctaatcagctcgcggtttagtttgaaattctggcggatccggttgttcagtaggttaatggtaacacaggttctg |
965 |
Q |
| |
|
||||||| ||||| | |||||||| ||| ||| || ||||| | |||||||| | |||| |||||||||||||| || |||||| |
|
|
| T |
18485188 |
cattgctacttctgagcagctcgcagttcagtctgctattctagaagatccggtggctcagcaggttaatggtaacgcaagttctg |
18485273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 19551447 - 19551550
Alignment:
| Q |
16 |
tctccttcgtctctcccaatggacgaaggattttaattagtattcacagaagcagactcacgcttctatctggatctgtttggttgacttaccgcaagaa |
115 |
Q |
| |
|
||||||||||||||| |||| ||||||||| |||||| | |||||| ||||||| ||||||||||| || ||||| | |||||||| || || |||||| |
|
|
| T |
19551447 |
tctccttcgtctctcacaatagacgaaggactttaatcattattcatagaagcaaactcacgcttccatttggattcgcttggttgaattgccccaagaa |
19551546 |
T |
|
| Q |
116 |
tatt |
119 |
Q |
| |
|
|||| |
|
|
| T |
19551547 |
tatt |
19551550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 389
Target Start/End: Original strand, 19552189 - 19552380
Alignment:
| Q |
195 |
ttctgccaactctttcagcttgacattgcagaatgttacagatgaaattccacagggaaggtttcctcactccgctagtcccgagttggaattggtttcc |
294 |
Q |
| |
|
|||||||||||| |||||||| | ||||| ||||||||||||||||| || || |||||||| ||||| | |||||||| ||| || ||| || |
|
|
| T |
19552189 |
ttctgccaactcgttcagctttgcgttgcaaaatgttacagatgaaatccctcaaggaaggttacctcaggcttctagtcccatgttagagttg---tct |
19552285 |
T |
|
| Q |
295 |
gaggtagcacacgatgacgtgcattcacagggagtagagaaaatgccacaggattctcggaacgtaagagttcttgggacttctgtcgctgctgt |
389 |
Q |
| |
|
|| ||||| ||| |||||||||||||||| ||||| || ||| | |||||| ||||||| |||| ||||||| || ||||| ||||||||| |
|
|
| T |
19552286 |
gaagtagcgcacaatgacgtgcattcacatggagtggaacaaacacaacaggactctcggaccgtacaggttcttgagatttctgccgctgctgt |
19552380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 323
Target Start/End: Complemental strand, 27457937 - 27457810
Alignment:
| Q |
193 |
gtttctgccaactctttcagcttgacattgcagaatgttacagatgaaattccacagggaaggtttcctcactccgctagtcccgagttggaattggttt |
292 |
Q |
| |
|
||||| |||||||| |||||||| ||||||| ||||||| |||||||| || || |||||||| ||||| ||| |||||| | |||||| || | |
|
|
| T |
27457937 |
gtttccgccaactcgttcagctttgcattgcataatgttatggatgaaatccctcaaggaaggttacctcaggccgttagtcctgtgttggagctg---t |
27457841 |
T |
|
| Q |
293 |
ccgaggtagcacacgatgacgtgcattcaca |
323 |
Q |
| |
|
|||| ||||| |||||||||||||||||||| |
|
|
| T |
27457840 |
ccgaagtagcgcacgatgacgtgcattcaca |
27457810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 3009074 - 3009039
Alignment:
| Q |
17 |
ctccttcgtctctcccaatggacgaaggattttaat |
52 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3009074 |
ctccttcgcctctcccaatggacgaaggattttaat |
3009039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 11482902 - 11482983
Alignment:
| Q |
64 |
gaagcagactcacgcttctatctggatctgtttggttgacttaccgcaagaatattggcgggaacaaacattgaaggaaata |
145 |
Q |
| |
|
|||||||||||| ||||||||||| | | || ||||||| |||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
11482902 |
gaagcagactcatgcttctatctgaacccgtatggttgaattaccgcaagaatattggtgggaacaaacaccgaaggaaata |
11482983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 279 - 319
Target Start/End: Original strand, 21565079 - 21565119
Alignment:
| Q |
279 |
gttggaattggtttccgaggtagcacacgatgacgtgcatt |
319 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
21565079 |
gttggaattggtttccgaggtagcccacgatgacgtgcatt |
21565119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 20380961 - 20381013
Alignment:
| Q |
93 |
gtttggttgacttaccgcaagaatattggcgggaacaaacattgaaggaaata |
145 |
Q |
| |
|
||||||| || ||||||||||| ||||||||||| | |||||||||||||||| |
|
|
| T |
20380961 |
gtttggtggagttaccgcaagagtattggcgggagcgaacattgaaggaaata |
20381013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 145
Target Start/End: Complemental strand, 25976689 - 25976639
Alignment:
| Q |
95 |
ttggttgacttaccgcaagaatattggcgggaacaaacattgaaggaaata |
145 |
Q |
| |
|
||||| || ||||||||||| ||||||||||||| ||| |||||||||||| |
|
|
| T |
25976689 |
ttggtggagttaccgcaagagtattggcgggaacgaaccttgaaggaaata |
25976639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 14679887 - 14679836
Alignment:
| Q |
93 |
gtttggttgacttaccgcaagaatattggcgggaacaaacattgaaggaaat |
144 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
14679887 |
gtttggttgagttaccgcaagagtattggcgggaacgtacattgaaggaaat |
14679836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 145
Target Start/End: Original strand, 21093495 - 21093584
Alignment:
| Q |
56 |
tattcacagaagcagactcacgcttctatctggatctgtttggttgacttaccgcaagaatattggcgggaacaaacattgaaggaaata |
145 |
Q |
| |
|
||||||||||| |||||||| ||||| || |||||| | ||||| || ||||| |||||||||| || ||||| || |||||||||||| |
|
|
| T |
21093495 |
tattcacagaaccagactcatgcttccatttggatccgcttggtcgaattaccacaagaatattagcaggaacgtactttgaaggaaata |
21093584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 38085 - 38137
Alignment:
| Q |
93 |
gtttggttgacttaccgcaagaatattggcgggaacaaacattgaaggaaata |
145 |
Q |
| |
|
||||||| || ||||||||||| ||||||||||| | |||||||||||||||| |
|
|
| T |
38085 |
gtttggtggagttaccgcaagagtattggcgggagcgaacattgaaggaaata |
38137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 160694 - 160642
Alignment:
| Q |
93 |
gtttggttgacttaccgcaagaatattggcgggaacaaacattgaaggaaata |
145 |
Q |
| |
|
||||||| || ||||||||||| ||||||||||| | |||||||||||||||| |
|
|
| T |
160694 |
gtttggtggagttaccgcaagagtattggcgggagcgaacattgaaggaaata |
160642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0567 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0567
Description:
Target: scaffold0567; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 839 - 874
Alignment:
| Q |
17 |
ctccttcgtctctcccaatggacgaaggattttaat |
52 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |
|
|
| T |
839 |
ctccttcgcctctcccaatggacgaaggattttaat |
874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0490 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0490
Description:
Target: scaffold0490; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 144
Target Start/End: Original strand, 12090 - 12141
Alignment:
| Q |
93 |
gtttggttgacttaccgcaagaatattggcgggaacaaacattgaaggaaat |
144 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||| | |||||||||||||| |
|
|
| T |
12090 |
gtttggttgagttaccgcaagagtattggcgggagcgtacattgaaggaaat |
12141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0125 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0125
Description:
Target: scaffold0125; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 31486 - 31435
Alignment:
| Q |
93 |
gtttggttgacttaccgcaagaatattggcgggaacaaacattgaaggaaat |
144 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
31486 |
gtttggttgagttaccgcaagagtattggcgggaatgtacattgaaggaaat |
31435 |
T |
|
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Target: chr8 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 17271738 - 17271772
Alignment:
| Q |
17 |
ctccttcgtctctcccaatggacgaaggattttaa |
51 |
Q |
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| T |
17271738 |
ctccttcgcctctcccaatggacgaaggattttaa |
17271772 |
T |
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