View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13808_low_23 (Length: 395)
Name: NF13808_low_23
Description: NF13808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13808_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 10 - 378
Target Start/End: Original strand, 29944472 - 29944840
Alignment:
| Q |
10 |
atattgattacaaacatgcatctttttattccctattttgtaacttgtttgaactgttttgtgtagggatcaaaaacacatatgggtggtaccatgcgtc |
109 |
Q |
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| T |
29944472 |
atattgattacaaacatgcatctttttattccctattttgtaacttgtttgaactgttttgtgtagggatcaaaaacacatatgggtggtaccatgcgtc |
29944571 |
T |
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| Q |
110 |
ttggatcaaggaggacatatttccagaccaaggaatgcaaatctgcaaaattgtgagtatgccgatgactcaatattttatgtggcatgaaagagataaa |
209 |
Q |
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| T |
29944572 |
ttggatcaaggaggacatatttccagaccaaggaatgcaaatctgcaaaattgtgagtatgccgatgactcaatattttatgtggcatgaaagagataaa |
29944671 |
T |
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| Q |
210 |
tatgtgctttcaatgaatgagatttattaggtttctaacacgtagaccctgtctcttagatatggctgcaaaagcttcattgatgagagacatcggcata |
309 |
Q |
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| T |
29944672 |
tatgtgctttcaatgaatgagatttattaggtttctaacacgtagaccctgtctcttagatatggctgcaaaagcttcattgatgagagacatcggcata |
29944771 |
T |
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| Q |
310 |
gatatgaggtattgcatttgcattgtcatgcataaaattatcttgtatgtttctataaaacagagaatg |
378 |
Q |
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| T |
29944772 |
gatatgaggtattgcatttgcattgtcatgcataaaattatcttgtatgtttctataaaacagagaatg |
29944840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 18361283 - 18361332
Alignment:
| Q |
73 |
tagggatcaaaaacacatatgggtggtaccatgcgtcttggatcaaggag |
122 |
Q |
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| T |
18361283 |
tagggttcaaagacacatatgggtggaaccatgcgtcttggttcaaggag |
18361332 |
T |
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