View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13808_low_28 (Length: 343)
Name: NF13808_low_28
Description: NF13808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13808_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 327
Target Start/End: Original strand, 2456452 - 2456770
Alignment:
| Q |
19 |
ataaatcctatgaacaggttacaatagctagatagttgctaaaataaatagaataatgttattttaaacctaaaaacttgacatcaaattttgacaacaa |
118 |
Q |
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| T |
2456452 |
ataaatcctatgaacaggttacaatagctagatagttgctaaaataaatagaataatgtaattttaaacctaaaaacttgacatcaaattttgacaacaa |
2456551 |
T |
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| Q |
119 |
attaaattagatggttagat---------taaattcattttgtataaggataaaggttaaatagattaacttaatagttgaaagagttagaatagaagtc |
209 |
Q |
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| T |
2456552 |
attaaattagatggttagattaaagagattaaattcattttgtataaggataaaggttaaataaattaacttaatagttgaaagagttagaatagaagtc |
2456651 |
T |
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| Q |
210 |
ttgagtttaaatctggtctccaacttttcgtatattagtcctctagattccttga-ttttttctactttaactttcaatggagattcaactctgcattga |
308 |
Q |
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||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
2456652 |
ttgagtttaaatctggtctgcaacttttcatatattagtcctctagattccttgatttttttctacattaactttcaatggagattcaactcttcattga |
2456751 |
T |
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| Q |
309 |
agttgtattaaagtcctat |
327 |
Q |
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|||||||||||||| |||| |
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| T |
2456752 |
agttgtattaaagtactat |
2456770 |
T |
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