View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13808_low_29 (Length: 340)
Name: NF13808_low_29
Description: NF13808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13808_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 20 - 324
Target Start/End: Complemental strand, 31097190 - 31096890
Alignment:
| Q |
20 |
aacaaccttcaagatacaacactcttgctaacggtgtttatcattggattacgaatagaagtagttctgcaaacatcatctgctttgactttcgcaataa |
119 |
Q |
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| T |
31097190 |
aacaaccttcaagatacaacactcttgctaacggtgtttatcattggattacgaatagaagtagttctgcaaacatcatctgctttgactttcgcaataa |
31097091 |
T |
|
| Q |
120 |
ccagtttcgtcaacttaaagctccaaacagcttcaaaatagttctattatttaagagttgttattagcatatagaagaaaattatgctacaatactcggt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31097090 |
ccagtttcgtcaacttaaagctccaaacagcttcaaaatagttctattatttaagagttgttattagcatatcgaagaaaattatgctacaatactcggt |
31096991 |
T |
|
| Q |
220 |
taacagtttctacttgttattgattattgtcttctcaagattattttatgaagatagtaatcctattcctagtgagagactccattgtcttgaatggttt |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31096990 |
taacagtttctacttgttattgattattgtcttctcaagattattttatga----agtaatcctattcctagtgagagactccattgtcttgaatggttt |
31096895 |
T |
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| Q |
320 |
ctgtg |
324 |
Q |
| |
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||||| |
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| T |
31096894 |
ctgtg |
31096890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 31103739 - 31103693
Alignment:
| Q |
25 |
ccttcaagatacaacactcttgctaacggtgtttatcattggattac |
71 |
Q |
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| T |
31103739 |
ccttcaagatacaacactcttgttaacggtgtttattattggattac |
31103693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 323
Target Start/End: Complemental strand, 31108586 - 31108552
Alignment:
| Q |
289 |
tagtgagagactccattgtcttgaatggtttctgt |
323 |
Q |
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| T |
31108586 |
tagtgagagactccactgtcttgaatggtttctgt |
31108552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 143
Target Start/End: Original strand, 1178289 - 1178343
Alignment:
| Q |
89 |
caaacatcatctgctttgactttcgcaataaccagtttcgtcaacttaaagctcc |
143 |
Q |
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|||||||||||||||||||||||| ||| || ||||||| ||||| |||||||| |
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| T |
1178289 |
caaacatcatctgctttgactttcacaacaatcagtttcaccaactcaaagctcc |
1178343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 71
Target Start/End: Complemental strand, 7495427 - 7495389
Alignment:
| Q |
33 |
atacaacactcttgctaacggtgtttatcattggattac |
71 |
Q |
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|||||||||||||| ||| |||||||||||||||||||| |
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| T |
7495427 |
atacaacactcttgttaatggtgtttatcattggattac |
7495389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 7873377 - 7873423
Alignment:
| Q |
25 |
ccttcaagatacaacactcttgctaacggtgtttatcattggattac |
71 |
Q |
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||||| ||||| |||||||||| |||||| ||||||||||||||||| |
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| T |
7873377 |
ccttctagatataacactcttgttaacggcgtttatcattggattac |
7873423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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