View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13808_low_32 (Length: 329)
Name: NF13808_low_32
Description: NF13808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13808_low_32 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 9 - 312
Target Start/End: Original strand, 38862344 - 38862647
Alignment:
| Q |
9 |
acatcatcaccacctccaccgccgccgattaaggaaagtaagaaaagagcatttagaggagtaagaactaggccatggggaaaatttgcggcggagataa |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
38862344 |
acatcatcaccacctccaccgccgccgattaaggaaagtaagaaaagagcatttagaggagtaagaactaggccatggggaaaatttgccgcggagataa |
38862443 |
T |
|
| Q |
109 |
gagattcaacaagaaaaggtgttagagtgtggattggaacattcgacacggccgaagcagctgctttagcttatgatcaagcagctttttcaacaagagg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38862444 |
gagattcaacaagaaaaggtgttagagtgtggattggaacattcgacacggccgaagcagctgctttagcttatgatcaagcagctttttcaacaagagg |
38862543 |
T |
|
| Q |
209 |
ttcattggcagtgttgaattttcctgaagaagtagtgagagaatcacttaaagaaatggctagtaattctaagcctttggatgaaggtacttcacctgta |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38862544 |
ttcattggcagtgttgaattttcctgaagaagtagtgagagaatcacttaaagaaatggctagtaattctaagcctttggatgaaggcacttcacctgta |
38862643 |
T |
|
| Q |
309 |
ttgg |
312 |
Q |
| |
|
|||| |
|
|
| T |
38862644 |
ttgg |
38862647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 84 - 196
Target Start/End: Original strand, 38830698 - 38830810
Alignment:
| Q |
84 |
tggggaaaatttgcggcggagataagagattcaacaagaaaaggtgttagagtgtggattggaacattcgacacggccgaagcagctgctttagcttatg |
183 |
Q |
| |
|
||||||||||| || || |||||||| || |||||||||| |||||| | ||||||||||||||||| || || || |||||||||||||||||||||| |
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| T |
38830698 |
tggggaaaattcgcagcagagataagggacacaacaagaaatggtgttcgtgtgtggattggaacatttgatacagctgaagcagctgctttagcttatg |
38830797 |
T |
|
| Q |
184 |
atcaagcagcttt |
196 |
Q |
| |
|
| ||||||||||| |
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|
| T |
38830798 |
accaagcagcttt |
38830810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 141; Significance: 7e-74; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 36 - 312
Target Start/End: Original strand, 19840505 - 19840781
Alignment:
| Q |
36 |
attaaggaaagtaagaaaagagcatttagaggagtaagaactaggccatggggaaaatttgcggcggagataagagattcaacaagaaaaggtgttagag |
135 |
Q |
| |
|
||||| |||||||| ||||| | |||||||| ||||||| ||||||||||| ||||| |||||||||||||| || |||||||||||||| | ||||| |
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| T |
19840505 |
attaaagaaagtaataaaagggtgtttagaggtataagaacaaggccatgggggaaattcgcggcggagataagggactcaacaagaaaaggggctagag |
19840604 |
T |
|
| Q |
136 |
tgtggattggaacattcgacacggccgaagcagctgctttagcttatgatcaagcagctttttcaacaagaggttcattggcagtgttgaattttcctga |
235 |
Q |
| |
|
| ||| ||||||||||| |||||||||||| ||||||||||||||| || ||||| |||| || | |||||||||||||||| |||||||||||||| || |
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|
| T |
19840605 |
tatggcttggaacattcaacacggccgaagaagctgctttagcttacgaccaagccgcttatttagcaagaggttcattggctgtgttgaattttccaga |
19840704 |
T |
|
| Q |
236 |
agaagtagtgagagaatcacttaaagaaatggctagtaattctaagcctttggatgaaggtacttcacctgtattgg |
312 |
Q |
| |
|
||||||||| | ||||||||| ||||||||| |||| ||||||||||||||||| ||||||||||| ||||| |||| |
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|
| T |
19840705 |
agaagtagttaaagaatcactcaaagaaatgtctagaaattctaagcctttggaagaaggtacttcgcctgtgttgg |
19840781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 36 - 301
Target Start/End: Complemental strand, 19720088 - 19719823
Alignment:
| Q |
36 |
attaaggaaagtaagaaaagagcatttagaggagtaagaactaggccatggggaaaatttgcggcggagataagagattcaacaagaaaaggtgttagag |
135 |
Q |
| |
|
||||| |||||||| | ||| | ||||||||||||| ||| ||||||||||| ||||| |||||||||||||| || |||||||||||||| | ||||| |
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|
| T |
19720088 |
attaaagaaagtaacacaagggtatttagaggagtacgaagaaggccatgggggaaattcgcggcggagataagggactcaacaagaaaaggggctagag |
19719989 |
T |
|
| Q |
136 |
tgtggattggaacattcgacacggccgaagcagctgctttagcttatgatcaagcagctttttcaacaagaggttcattggcagtgttgaattttcctga |
235 |
Q |
| |
|
| ||| ||||||||||| |||||||||||| ||||||||||||||| || ||||| ||||||| | ||||||||||||||||||||||||||||||| || |
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|
| T |
19719988 |
tatggcttggaacattcaacacggccgaagaagctgctttagcttacgaccaagctgcttttttagcaagaggttcattggcagtgttgaattttccaga |
19719889 |
T |
|
| Q |
236 |
agaagtagtgagagaatcacttaaagaaatggctagtaattctaagcctttggatgaaggtacttc |
301 |
Q |
| |
|
|| ||||| | ||||| ||| |||||||||||||| |||||| ||||||| || ||||||||||| |
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|
| T |
19719888 |
ggatgtagttaaagaattactcaaagaaatggctagaaattctgagcctttagaagaaggtacttc |
19719823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 36 - 312
Target Start/End: Complemental strand, 19892979 - 19892703
Alignment:
| Q |
36 |
attaaggaaagtaagaaaagagcatttagaggagtaagaactaggccatggggaaaatttgcggcggagataagagattcaacaagaaaaggtgttagag |
135 |
Q |
| |
|
||||| |||||||| ||||| | ||||||||||| ||| ||||||||||| ||||| ||||| |||||||| || || ||||||||||| | ||| | |
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|
| T |
19892979 |
attaaagaaagtaacaaaagggtgcttagaggagtacgaagaaggccatgggggaaattcgcggccgagataagggactcgacaagaaaaggggctaggg |
19892880 |
T |
|
| Q |
136 |
tgtggattggaacattcgacacggccgaagcagctgctttagcttatgatcaagcagctttttcaacaagaggttcattggcagtgttgaattttcctga |
235 |
Q |
| |
|
| ||| ||||||||||| |||||| |||| ||| |||||||||||||| ||||| ||||||||| ||| ||||||||||||||||||||||||||| || |
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|
| T |
19892879 |
tatggcttggaacattcaacacggaggaagaagccgctttagcttatgaccaagccgctttttcagcaaaaggttcattggcagtgttgaattttccgga |
19892780 |
T |
|
| Q |
236 |
agaagtagtgagagaatcacttaaagaaatggctagtaattctaagcctttggatgaaggtacttcacctgtattgg |
312 |
Q |
| |
|
|| ||||| | ||| ||||| ||||||||||||| |||||| ||||||| || ||||||||||| ||||| |||| |
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|
| T |
19892779 |
ggatgtagttaaagattcactcaaagaaatggctataaattctgagcctttagaagaaggtacttctcctgtgttgg |
19892703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 3e-51; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 81 - 267
Target Start/End: Complemental strand, 30624003 - 30623817
Alignment:
| Q |
81 |
ccatggggaaaatttgcggcggagataagagattcaacaagaaaaggtgttagagtgtggattggaacattcgacacggccgaagcagctgctttagctt |
180 |
Q |
| |
|
|||||||||||||| || ||||| |||||||| ||||||||||||||||||||||| |||||||| ||||| || || || ||||| ||||||||||||| |
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|
| T |
30624003 |
ccatggggaaaattcgcagcggaaataagagactcaacaagaaaaggtgttagagtttggattggtacatttgatacagctgaagctgctgctttagctt |
30623904 |
T |
|
| Q |
181 |
atgatcaagcagctttttcaacaagaggttcattggcagtgttgaattttcctgaagaagtagtgagagaatcacttaaagaaatgg |
267 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||| | || ||||| |||||| | ||||| |||| |
|
|
| T |
30623903 |
atgatcaagcagctttatcaacaagaggatcaatggcagtgttgaattttcctgaacatgttgtgagggaatcattgaaagatatgg |
30623817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 81 - 267
Target Start/End: Complemental strand, 30629634 - 30629448
Alignment:
| Q |
81 |
ccatggggaaaatttgcggcggagataagagattcaacaagaaaaggtgttagagtgtggattggaacattcgacacggccgaagcagctgctttagctt |
180 |
Q |
| |
|
|||||||||||||| || ||||| |||||||| ||||| ||||| ||||||||||| |||||||| ||||| || || || |||||||| |||||||||| |
|
|
| T |
30629634 |
ccatggggaaaattcgcagcggaaataagagactcaactagaaatggtgttagagtttggattggtacatttgatacagctgaagcagcagctttagctt |
30629535 |
T |
|
| Q |
181 |
atgatcaagcagctttttcaacaagaggttcattggcagtgttgaattttcctgaagaagtagtgagagaatcacttaaagaaatgg |
267 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||| | || ||||| |||||| | ||||| |||| |
|
|
| T |
30629534 |
atgatcaagcagctttatcaacaagaggatcaatggcagtgttgaattttcctgaacatgttgtgagggaatcattgaaagatatgg |
30629448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 199
Target Start/End: Original strand, 33042550 - 33042668
Alignment:
| Q |
81 |
ccatggggaaaatttgcggcggagataagagattcaacaagaaaaggtgttagagtgtggattggaacattcgacacggccgaagcagctgctttagctt |
180 |
Q |
| |
|
|||||||| |||||||| || |||||||||||||| || || || || | || |||||| | ||||| || || | || ||||| |||||||| |||| |
|
|
| T |
33042550 |
ccatgggggaaatttgcagcagagataagagattcgacgaggaatggaatgagggtgtggctaggaacctttgatagtgcagaagctgctgctttggctt |
33042649 |
T |
|
| Q |
181 |
atgatcaagcagctttttc |
199 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
33042650 |
atgatcaagcagctttttc |
33042668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 196
Target Start/End: Complemental strand, 4420277 - 4420143
Alignment:
| Q |
62 |
tagaggagtaagaactaggccatggggaaaatttgcggcggagataagagattcaacaagaaaaggtgttagagtgtggattggaacattcgacacggcc |
161 |
Q |
| |
|
|||||||||||| | |||||||||||||||| ||| || || || ||||||||| ||| |||||| ||||| ||| |||| ||||| || || || |
|
|
| T |
4420277 |
tagaggagtaaggagaaggccatggggaaaatatgcagctgaaattagagattcatcaaagaaaggttcaagagtttggcttggtacatttgatacagct |
4420178 |
T |
|
| Q |
162 |
gaagcagctgctttagcttatgatcaagcagcttt |
196 |
Q |
| |
|
||| ||||||||||||||||||| |||| ||||| |
|
|
| T |
4420177 |
gaacaagctgctttagcttatgataaagctgcttt |
4420143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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