View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13808_low_33 (Length: 325)

Name: NF13808_low_33
Description: NF13808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13808_low_33
NF13808_low_33
[»] chr1 (1 HSPs)
chr1 (10-308)||(41853348-41853668)


Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 10 - 308
Target Start/End: Original strand, 41853348 - 41853668
Alignment:
Q  10 ataatactagggccacatagaaaaaccagacatttccctcaatgatagtacaaatgtttgccggtatttgctgatcattaactgaaaatatttatgcaaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41853348 ataatactagggccacatagaaaaaccagacatttccctcaatgatagtacaaatgtttgccggtatttgctgatcattaactgaaaatatttatgcaaa 41853447  T
Q  110 caagagacagatgatatcactg----------------------aagtaagtgattgaccattgctgaataaatcaatggttaatgtcacaacgcacatg 187  Q
    ||||||||| ||||||||||||                      ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41853448 caagagacaaatgatatcactgaaaaatcagcattgctcctctgaagtaagtgattgaccattgctgaataaatcaatggttaatgtcacaacccacatg 41853547  T
Q  188 cattacaaatcataagggcattgaaacatcaaaccttaaatttctcattaataattgagattactagtcacttgaggagagttagatcccactgaaccat 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41853548 cattacaaatcataagggcattgaaacatcaaaccttaaatttctcattaataattgagattactagtcacttgaggagagttagatcccactgaaccat 41853647  T
Q  288 gatgtttagtttgatgaatat 308  Q
    |||||||||||||||||||||    
T  41853648 gatgtttagtttgatgaatat 41853668  T

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