View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13808_low_38 (Length: 286)

Name: NF13808_low_38
Description: NF13808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13808_low_38
NF13808_low_38
[»] chr4 (15 HSPs)
chr4 (1-193)||(10708976-10709168)
chr4 (1-193)||(10922746-10922938)
chr4 (97-195)||(10667227-10667325)
chr4 (97-195)||(10881372-10881470)
chr4 (97-185)||(10702965-10703053)
chr4 (97-185)||(10916735-10916823)
chr4 (97-195)||(10672072-10672170)
chr4 (97-195)||(10885712-10885810)
chr4 (97-195)||(10700012-10700110)
chr4 (97-195)||(10913782-10913880)
chr4 (112-195)||(10682470-10682553)
chr4 (112-195)||(10896110-10896193)
chr4 (112-195)||(10717721-10717804)
chr4 (112-195)||(10931491-10931574)
chr4 (123-177)||(17216048-17216102)


Alignment Details
Target: chr4 (Bit Score: 161; Significance: 7e-86; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 10708976 - 10709168
Alignment:
Q  1 agtgacccccgaagccatttgaaccgggagcaccatctccattcagatcaaaaacagcccctttaattttctcacgcaaaggaagcctaagtatgataat 100  Q
    |||||||||||||||||| || |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10708976 agtgacccccgaagccatctggaccgggagcagcatctccattcatatcaaaaacagcccctttaattttctcacgcaaaggaagcctaagtatgataat 10709075  T
Q  101 attcattagaatattgagtttgactatattttgtttcattccgctttactaagtaactgtaaattgtttagaacttatcttttaaaaactctt 193  Q
    || |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10709076 atccattagaatattgagtataactatattttgtttcattccgctttactaagtaactgtaaattgtttagaacttatcttttaaaagctctt 10709168  T

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Target: chr4; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 10922746 - 10922938
Alignment:
Q  1 agtgacccccgaagccatttgaaccgggagcaccatctccattcagatcaaaaacagcccctttaattttctcacgcaaaggaagcctaagtatgataat 100  Q
    |||||||||||||||||| || |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10922746 agtgacccccgaagccatctggaccgggagcagcatctccattcatatcaaaaacagcccctttaattttctcacgcaaaggaagcctaagtatgataat 10922845  T
Q  101 attcattagaatattgagtttgactatattttgtttcattccgctttactaagtaactgtaaattgtttagaacttatcttttaaaaactctt 193  Q
    || |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10922846 atccattagaatattgagtataactatattttgtttcattccgctttactaagtaactgtaaattgtttagaacttatcttttaaaagctctt 10922938  T

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Target: chr4; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 97 - 195
Target Start/End: Complemental strand, 10667325 - 10667227
Alignment:
Q  97 taatattcattagaatattgagtttgactatattttgtttcattccgctttactaagtaactgtaaattgtttagaacttatcttttaaaaactctttc 195  Q
    |||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  10667325 taatatccattagaatattgagtttaactatattttgtttcatcccgctttactaagtaactgtaaattgtttagaatttatcttttaaaagctctttc 10667227  T

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Target: chr4; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 97 - 195
Target Start/End: Complemental strand, 10881470 - 10881372
Alignment:
Q  97 taatattcattagaatattgagtttgactatattttgtttcattccgctttactaagtaactgtaaattgtttagaacttatcttttaaaaactctttc 195  Q
    |||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  10881470 taatatccattagaatattgagtttaactatattttgtttcatcccgctttactaagtaactgtaaattgtttagaatttatcttttaaaagctctttc 10881372  T

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Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 97 - 185
Target Start/End: Original strand, 10702965 - 10703053
Alignment:
Q  97 taatattcattagaatattgagtttgactatattttgtttcattccgctttactaagtaactgtaaattgtttagaacttatcttttaa 185  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||| ||||||    
T  10702965 taatatccattagaatattgagtttaactatattttgtttcattccgctttattaagtaattgtaacttgtttagaacttatattttaa 10703053  T

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Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 97 - 185
Target Start/End: Original strand, 10916735 - 10916823
Alignment:
Q  97 taatattcattagaatattgagtttgactatattttgtttcattccgctttactaagtaactgtaaattgtttagaacttatcttttaa 185  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||| ||||||    
T  10916735 taatatccattagaatattgagtttaactatattttgtttcattccgctttattaagtaattgtaacttgtttagaacttatattttaa 10916823  T

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Target: chr4; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 97 - 195
Target Start/End: Complemental strand, 10672170 - 10672072
Alignment:
Q  97 taatattcattagaatattgagtttgactatattttgtttcattccgctttactaagtaactgtaaattgtttagaacttatcttttaaaaactctttc 195  Q
    |||||| ||| |||||||| ||||| |||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| | |||||||    
T  10672170 taatatccatcagaatattcagtttaactaaattttgtttcattccgctttactaagtaattgtaacttgtttagaacttatcttttaagagctctttc 10672072  T

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Target: chr4; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 97 - 195
Target Start/End: Complemental strand, 10885810 - 10885712
Alignment:
Q  97 taatattcattagaatattgagtttgactatattttgtttcattccgctttactaagtaactgtaaattgtttagaacttatcttttaaaaactctttc 195  Q
    |||||| ||| |||||||| ||||| |||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| | |||||||    
T  10885810 taatatccatcagaatattcagtttaactaaattttgtttcattccgctttactaagtaattgtaacttgtttagaacttatcttttaagagctctttc 10885712  T

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Target: chr4; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 97 - 195
Target Start/End: Original strand, 10700012 - 10700110
Alignment:
Q  97 taatattcattagaatattgagtttgactatattttgtttcattccgctttactaagtaactgtaaattgtttagaacttatcttttaaaaactctttc 195  Q
    |||||| ||| |||||||||||||| |||| |||||||||||||||||| |||||| ||| ||||| |||||||||||||||||||||| | |||||||    
T  10700012 taatatccatcagaatattgagtttaactaaattttgtttcattccgctgtactaaataattgtaacttgtttagaacttatcttttaagagctctttc 10700110  T

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Target: chr4; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 97 - 195
Target Start/End: Original strand, 10913782 - 10913880
Alignment:
Q  97 taatattcattagaatattgagtttgactatattttgtttcattccgctttactaagtaactgtaaattgtttagaacttatcttttaaaaactctttc 195  Q
    |||||| ||| |||||||||||||| |||| |||||||||||||||||| |||||| ||| ||||| |||||||||||||||||||||| | |||||||    
T  10913782 taatatccatcagaatattgagtttaactaaattttgtttcattccgctgtactaaataattgtaacttgtttagaacttatcttttaagagctctttc 10913880  T

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Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 112 - 195
Target Start/End: Complemental strand, 10682553 - 10682470
Alignment:
Q  112 tattgagtttgactatattttgtttcattccgctttactaagtaactgtaaattgtttagaacttatcttttaaaaactctttc 195  Q
    |||||||||| ||||||| |||||||||||||||| || || ||| ||||| | ||||||||||||| |||||| | |||||||    
T  10682553 tattgagtttaactatatattgtttcattccgcttcacgaaataattgtaactcgtttagaacttatgttttaagagctctttc 10682470  T

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Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 112 - 195
Target Start/End: Complemental strand, 10896193 - 10896110
Alignment:
Q  112 tattgagtttgactatattttgtttcattccgctttactaagtaactgtaaattgtttagaacttatcttttaaaaactctttc 195  Q
    |||||||||| ||||||| |||||||||||||||| || || ||| ||||| | ||||||||||||| |||||| | |||||||    
T  10896193 tattgagtttaactatatattgtttcattccgcttcacgaaataattgtaactcgtttagaacttatgttttaagagctctttc 10896110  T

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Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 195
Target Start/End: Complemental strand, 10717804 - 10717721
Alignment:
Q  112 tattgagtttgactatattttgtttcattccgctttactaagtaactgtaaattgtttagaacttatcttttaaaaactctttc 195  Q
    |||||||||| ||||||| |||||||||| ||||| || || ||| ||||| | ||||||||||||| |||||| | |||||||    
T  10717804 tattgagtttaactatatattgtttcattgcgcttcacgaaataattgtaactcgtttagaacttatgttttaagagctctttc 10717721  T

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Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 195
Target Start/End: Complemental strand, 10931574 - 10931491
Alignment:
Q  112 tattgagtttgactatattttgtttcattccgctttactaagtaactgtaaattgtttagaacttatcttttaaaaactctttc 195  Q
    |||||||||| ||||||| |||||||||| ||||| || || ||| ||||| | ||||||||||||| |||||| | |||||||    
T  10931574 tattgagtttaactatatattgtttcattgcgcttcacgaaataattgtaactcgtttagaacttatgttttaagagctctttc 10931491  T

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Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 177
Target Start/End: Original strand, 17216048 - 17216102
Alignment:
Q  123 actatattttgtttcattccgctttactaagtaactgtaaattgtttagaactta 177  Q
    |||||||||||||||||||| ||||||||||||| ||||| | ||||| ||||||    
T  17216048 actatattttgtttcattccactttactaagtaattgtaactcgtttaaaactta 17216102  T

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