View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13808_low_39 (Length: 282)
Name: NF13808_low_39
Description: NF13808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13808_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 40723271 - 40723012
Alignment:
| Q |
18 |
gttttcttacgaatgtctgtattaacaggttgttgaggtgcctaatgtcagctgggaggacatcggaggccttgagaatgtcaagcgtgaactgcaagag |
117 |
Q |
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| T |
40723271 |
gttttcttacgaatgtctgtattaacatgttgttgaggtgcctaatgtcagctgggaggacatcggaggccttgagaatgtcaagcgtgaactgcaagag |
40723172 |
T |
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| Q |
118 |
gtcagaaatctttcctagtacttaattacaccttatttccttaccaatattatctatttctgattttggttaatgtgtacgcagactgttcaatatccag |
217 |
Q |
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| T |
40723171 |
gtcagaaatctttcttagtacttaattacaccttatttccttaccaatattatctatttctgattttggttaatgtgtacgcagactgttcaatatccag |
40723072 |
T |
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| Q |
218 |
ttgagcacccggaaaagtttgagaagtttgggatgtcaccatcaaaaggagttctcttct |
277 |
Q |
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| T |
40723071 |
ttgagcacccggaaaagtttgagaagtttgggatgtcaccatcaaaaggagttctcttct |
40723012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 40666734 - 40666993
Alignment:
| Q |
18 |
gttttcttacgaatgtctgtattaacaggttgttgaggtgcctaatgtcagctgggaggacatcggaggccttgagaatgtcaagcgtgaactgcaagag |
117 |
Q |
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| T |
40666734 |
gttttcttacgaatgtctgtattaacaggttgttgaggtgcctaatgtcagctgggaggacatcggaggccttgagaatgtcaagcgtgaactgcaagag |
40666833 |
T |
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| Q |
118 |
gtcagaaatctttcctagtacttaattacaccttatttccttaccaatattatctatttctgattttggttaatgtgtacgcagactgttcaatatccag |
217 |
Q |
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| T |
40666834 |
gtcataaatctttcctactacttaattacacctgatttccttactagttttacctgtttctgattttggtttgtgtgtacgtagactgttcaatatccgg |
40666933 |
T |
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| Q |
218 |
ttgagcacccggaaaagtttgagaagtttgggatgtcaccatcaaaaggagttctcttct |
277 |
Q |
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| T |
40666934 |
ttgagcacccggaaaagtttgagaagtttgggatgtcaccatccaaaggagttctcttct |
40666993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 198 - 277
Target Start/End: Original strand, 27978237 - 27978316
Alignment:
| Q |
198 |
gcagactgttcaatatccagttgagcacccggaaaagtttgagaagtttgggatgtcaccatcaaaaggagttctcttct |
277 |
Q |
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| T |
27978237 |
gcagactgttcaatatccagtggaacaccctgagaaatttgagaagtttgggatgtcaccttcaaagggagttctgttct |
27978316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 119
Target Start/End: Original strand, 27978082 - 27978158
Alignment:
| Q |
43 |
caggttgttgaggtgcctaatgtcagctgggaggacatcggaggccttgagaatgtcaagcgtgaactgcaagaggt |
119 |
Q |
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| T |
27978082 |
caggttgttgaagtgcccaatgtcagctgggaagatattggtggtcttgaaaatgttaagcgagaactccaggaggt |
27978158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 277
Target Start/End: Complemental strand, 41092097 - 41092018
Alignment:
| Q |
198 |
gcagactgttcaatatccagttgagcacccggaaaagtttgagaagtttgggatgtcaccatcaaaaggagttctcttct |
277 |
Q |
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| T |
41092097 |
gcagactgtccaatatccagtggaacaccctgaaaagtttgagaagtttggaatgtcgccttcgaagggagttcttttct |
41092018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 41092253 - 41092174
Alignment:
| Q |
43 |
caggttgttgaggtgcctaatgtcagctgggaggacatcggaggccttgagaatgtcaagcgtgaactgcaagaggtcag |
122 |
Q |
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| T |
41092253 |
caggttgttgaagtgcctaattgcagctgggatgatatcggcggtcttgaaaatgttaagagggaactccaagaggtcag |
41092174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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