View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13808_low_41 (Length: 271)
Name: NF13808_low_41
Description: NF13808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13808_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 9e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 60 - 212
Target Start/End: Complemental strand, 42366827 - 42366675
Alignment:
| Q |
60 |
agagagggcctacatctaatgaaaacaaaactataaagaaaataagcggagaatcgggacttcaaaatatcaaaacccaataattgagtaataatagaag |
159 |
Q |
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| T |
42366827 |
agagagggcctacatctaatgaaaacaaaactataaagaaaataagcggagaatcgggacttcaaaatatcaaaacccaataattgagtaataatagaag |
42366728 |
T |
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| Q |
160 |
taggagaagataacataaataatactaagccaagttagcagacaatctacaca |
212 |
Q |
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| T |
42366727 |
taggagaagataacataaataatactaagccaagttagcagacaatctgcaca |
42366675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 182
Target Start/End: Complemental strand, 42367384 - 42367333
Alignment:
| Q |
131 |
aaaacccaataattgagtaataatagaagtaggagaagataacataaataat |
182 |
Q |
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|||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42367384 |
aaaaaccaataattgggtaataatagaagtaggagaagataacataaataat |
42367333 |
T |
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