View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13808_low_44 (Length: 247)
Name: NF13808_low_44
Description: NF13808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13808_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 2892810 - 2892583
Alignment:
| Q |
1 |
tatattattaaacttttcaacaaatgttagttatcaataacttattttaattctaaatacttgacttgtctgctatttcataacttattatacatatgaa |
100 |
Q |
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| T |
2892810 |
tatattattaaacttt-caacaaatgttagttatcaataacttattttaattctaaatacttgacttgtctgctatttcataacttattatacatatgaa |
2892712 |
T |
|
| Q |
101 |
ttttccaaaacaaaccacatttttcttctttcaacatatccaaatgttgaacgaatcaaatcaaacagtaataattatttataaaacctacgtctcattc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
2892711 |
ttttccaaaacaaaccacatttttcttctttcaacatatccaaatgttgaacgaatcaaatcaaatagtaataattatttataaaacctacctctcattc |
2892612 |
T |
|
| Q |
201 |
atttttcatcatacacaaaaatggccatc |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
2892611 |
atttttcatcatacacaaaaatggccatc |
2892583 |
T |
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