View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13808_low_45 (Length: 245)
Name: NF13808_low_45
Description: NF13808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13808_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 2456402 - 2456171
Alignment:
| Q |
1 |
atgatgtatggctgaatcagtttggacactatctccaccatcaattgttacaccagttttaccaataaccccaattgcaatttccatatgacaaacattg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2456402 |
atgatgtatggctgaatcagtttggacactatctccaccatcaattgttacaccagttttaccaataaccccaattgcaatttccatatgacaaacattg |
2456303 |
T |
|
| Q |
101 |
ttgctctgaactagaaac-nnnnnnnnaaagacctatcacaaacatacctctaacataaatgataaaaattaaagacaataatcataacaaaat-aggag |
198 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
2456302 |
ttgctctgaactagaaactttttttttgaagacctatcacaaacatacctctaacataaataataaaaattaaagacaataatcataacaaaatgaggag |
2456203 |
T |
|
| Q |
199 |
tgatatttgtacaaccatgtgtgacaattttg |
230 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| |
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| T |
2456202 |
tgctatttgtacaaccatgtgtgacaattttg |
2456171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 14434106 - 14434142
Alignment:
| Q |
194 |
aggagtgatatttgtacaaccatgtgtgacaattttg |
230 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||| |
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| T |
14434106 |
aggagtgatatttgtacaactatgtgtgacaattttg |
14434142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 34810529 - 34810565
Alignment:
| Q |
194 |
aggagtgatatttgtacaaccatgtgtgacaattttg |
230 |
Q |
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|
| T |
34810529 |
aggagtgatatttgtacaatcatgtgtgacaattttg |
34810565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 53133838 - 53133874
Alignment:
| Q |
194 |
aggagtgatatttgtacaaccatgtgtgacaattttg |
230 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||| |
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| T |
53133838 |
aggagtgatatttgtacaaccatgtgtgacaactttg |
53133874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 225
Target Start/End: Complemental strand, 10426911 - 10426883
Alignment:
| Q |
197 |
agtgatatttgtacaaccatgtgtgacaa |
225 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
10426911 |
agtgatatttgtacaaccatgtgtgacaa |
10426883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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