View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13808_low_5 (Length: 645)

Name: NF13808_low_5
Description: NF13808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13808_low_5
NF13808_low_5
[»] chr1 (1 HSPs)
chr1 (3-628)||(13051769-13052394)


Alignment Details
Target: chr1 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 3 - 628
Target Start/End: Complemental strand, 13052394 - 13051769
Alignment:
Q  3 tcaagtgggtccgattttggagccaacatattattaaacctaccacctgtcaaaaatatgtcggtgctaacagttgaaagacaaccttgggaaggtgaaa 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  13052394 tcaagtgggtccgattttggagccaacatattattaaacctaccacctgtcaaaaacatgtcggtgctaacaattgaaagacaaccttgggaaggtgaaa 13052295  T
Q  103 accaaaatggcataccttacccgtcgtattttcatccaaaaacaaaagaagaaatgcttacgtggcagaataaaatgagacaaaacgacaggccgttttt 202  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13052294 accaaaacggcataccttacccgtcgtattttcatccaaaaacaaaagaagaaatgcttacgtggcagaataaaatgagacaaaacgacaggccgttttt 13052195  T
Q  203 gttttcatttattggtgggaaaagaaaagggttaggaaaagcaaagattcgtgatgagttggttaaacaatgtaatgagtcatctctttgcaagttggtt 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13052194 gttttcatttattggtgggaaaagaaaagggttaggaaaagcaaagattcgtgatgagttgtttaaacaatgtaatgagtcatctctttgcaagttggtt 13052095  T
Q  303 gattgtgggggtgggaatagtaaatgtcatcaaccaatggaagtacttagtgttatgatgcagtcacgtttttgtcttcaagcaccaggtgattctttta 402  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13052094 gattgtggaggtgggaatagtaaatgtcatcaaccaatggaagtacttagtgttatgatggagtcacgtttttgtcttcaagcaccaggtgattctttta 13051995  T
Q  403 ctagaaggtcaacttttgactctatactaactggttgtatacctatatttttctctccacatacggcatatacgcaataccattggtatttgcctaagga 502  Q
    ||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||| |    
T  13051994 ctagaaggtcaacttttgactctatacttgctggttgtatacctgtatttttctctccacatacggcgtattcgcaataccattggtatttgcctaagta 13051895  T
Q  503 gaaagatacttattcggtttatattgaagaggggggtgtaggaaagaagagtaatatgattgaggaggtgttaatgggaattaagggggtggaagttgaa 602  Q
     ||| |||  |||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13051894 taaaaatatgtattcggtgtatattgaagaggggggtgtaggtgagaagagtaatatgattgaggaggtgttaatgggaattaagggggtggaagttgaa 13051795  T
Q  603 aaaatgcgtgaggttgtgattggttt 628  Q
    ||||||||||| ||||||||||||||    
T  13051794 aaaatgcgtgaagttgtgattggttt 13051769  T

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