View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13808_low_50 (Length: 230)
Name: NF13808_low_50
Description: NF13808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13808_low_50 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 2390260 - 2390055
Alignment:
| Q |
17 |
aatattaccaattacccttaattttgtttagagaatgtaacaaatttttatgacattttctctctctttccaattaggccgtctacactcctccaaaacc |
116 |
Q |
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| T |
2390260 |
aatattaccaattacccttaattttgtttagagaatgtaacaaatttttatgacattttctctctctttccaattaggccgtctacactcctccaaaacc |
2390161 |
T |
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| Q |
117 |
agtacgaggaggaattccaatctgttttccacaggtaatttt-------agatagcagtactatttatttaacacctgaattacacaaatctatatagat |
209 |
Q |
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| T |
2390160 |
agtacgaggaggaattccaatctgttttccacaggtaattttagattttagatagcagtactatttatttaacacctgaattacacaaatctatatagat |
2390061 |
T |
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| Q |
210 |
agatag |
215 |
Q |
| |
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|||||| |
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| T |
2390060 |
agatag |
2390055 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 36807781 - 36807825
Alignment:
| Q |
109 |
ccaaaaccagtacgaggaggaattccaatctgttttccacaggta |
153 |
Q |
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| T |
36807781 |
ccaaaagcaatacgaggaggaattccaatatgttttccacaggta |
36807825 |
T |
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