View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13808_low_55 (Length: 203)
Name: NF13808_low_55
Description: NF13808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13808_low_55 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 15 - 185
Target Start/End: Complemental strand, 3299312 - 3299142
Alignment:
| Q |
15 |
atgaaggagtgaagggtgcattccagtactgatcagactttaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaatgttttggcaaccctagt |
114 |
Q |
| |
|
||||||| ||||||||||||| |||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3299312 |
atgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaatattttggcaaccctagt |
3299213 |
T |
|
| Q |
115 |
acaaatgacaataggaccaatatttggaccgaaagaagcagcaatatgactaggcagaataatcaaatccc |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3299212 |
acaaatgacaataggaccaatatttggaccgaaagaagcagcaatatgactaggcagaataatcaaatccc |
3299142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 15 - 185
Target Start/End: Complemental strand, 3392205 - 3392035
Alignment:
| Q |
15 |
atgaaggagtgaagggtgcattccagtactgatcagactttaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaatgttttggcaaccctagt |
114 |
Q |
| |
|
||||||| ||||||||||||| |||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3392205 |
atgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaatattttggcaaccctagt |
3392106 |
T |
|
| Q |
115 |
acaaatgacaataggaccaatatttggaccgaaagaagcagcaatatgactaggcagaataatcaaatccc |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3392105 |
acaaatgacaataggaccaatatttggaccgaaagaagcagcaatatgactaggcagaataatcaaatccc |
3392035 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 1163983 - 1164153
Alignment:
| Q |
15 |
atgaaggagtgaagggtgcattccagtactgatcagactttaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaatgttttggcaaccctagt |
114 |
Q |
| |
|
||||||| ||||||||||||| |||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1163983 |
atgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaatgttttggcaaccctagt |
1164082 |
T |
|
| Q |
115 |
acaaatgacaataggaccaatatttggaccgaaagaagcagcaatatgactaggcagaataatcaaatccc |
185 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
1164083 |
acaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaataatcaaatccc |
1164153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 15 - 185
Target Start/End: Complemental strand, 1849783 - 1849613
Alignment:
| Q |
15 |
atgaaggagtgaagggtgcattccagtactgatcagactttaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaatgttttggcaaccctagt |
114 |
Q |
| |
|
||||||| ||||||||||||| |||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
1849783 |
atgaaggcgtgaagggtgcatcccagtaacgatcagcctttaagaaacagcgggtcaaggtaaatggatcaagcaaagtaaatgttctggcaaccctagt |
1849684 |
T |
|
| Q |
115 |
acaaatgacaataggaccaatatttggaccgaaagaagcagcaatatgactaggcagaataatcaaatccc |
185 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
1849683 |
acaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaataatcaaatccc |
1849613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 38987506 - 38987344
Alignment:
| Q |
23 |
gtgaagggtgcattccagtactgatcagactttaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaatga |
122 |
Q |
| |
|
||||| ||||| ||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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|
| T |
38987506 |
gtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtgcatatga |
38987407 |
T |
|
| Q |
123 |
caataggaccaatatttggaccgaaagaagcagcaatatgactaggcagaataatcaaatccc |
185 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||| || | |||||||| |||||||||| |
|
|
| T |
38987406 |
caataggaccaatatttggacccaaagaagcaacaacattaggaggcagaaagatcaaatccc |
38987344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 40418096 - 40417934
Alignment:
| Q |
23 |
gtgaagggtgcattccagtactgatcagactttaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaatga |
122 |
Q |
| |
|
||||| ||||| ||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
40418096 |
gtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtgcaaatga |
40417997 |
T |
|
| Q |
123 |
caataggaccaatatttggaccgaaagaagcagcaatatgactaggcagaataatcaaatccc |
185 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||| || | |||||||| |||||||||| |
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|
| T |
40417996 |
caataggaccaatattttcaccgaaagaagcaacaacattaggaggcagaaagatcaaatccc |
40417934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 39726219 - 39726115
Alignment:
| Q |
23 |
gtgaagggtgcattccagtactgatcagactttaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaatga |
122 |
Q |
| |
|
||||| ||||| ||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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|
| T |
39726219 |
gtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtgcatatga |
39726120 |
T |
|
| Q |
123 |
caata |
127 |
Q |
| |
|
||||| |
|
|
| T |
39726119 |
caata |
39726115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 39879621 - 39879517
Alignment:
| Q |
23 |
gtgaagggtgcattccagtactgatcagactttaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaatga |
122 |
Q |
| |
|
||||| ||||| ||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
39879621 |
gtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtgcatatga |
39879522 |
T |
|
| Q |
123 |
caata |
127 |
Q |
| |
|
||||| |
|
|
| T |
39879521 |
caata |
39879517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 39168707 - 39168603
Alignment:
| Q |
23 |
gtgaagggtgcattccagtactgatcagactttaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaatga |
122 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||| || | |||||||||||||||||||| ||||||| | |||||||||||||||| || || | |
|
|
| T |
39168707 |
gtgaagggtgcattccagtactcatcagcctttaaggaaaaagcagtcaaggtaaatggatcaagtaaagtaatttttttggcaaccctagtgcatataa |
39168608 |
T |
|
| Q |
123 |
caata |
127 |
Q |
| |
|
||||| |
|
|
| T |
39168607 |
caata |
39168603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 39399708 - 39399601
Alignment:
| Q |
23 |
gtgaagggtgcattccagtactgatcagactttaagaaacagtgggtcaaggtaaatggatcaagcaa---agtaaatgttttggcaaccctagtacaaa |
119 |
Q |
| |
|
||||| |||||||||||||| ||||||| ||||||| || | |||||||||||||||||||||||| ||||| | |||||||||||||||| || | |
|
|
| T |
39399708 |
gtgaaaggtgcattccagtagtgatcagcctttaaggaaaaagcggtcaaggtaaatggatcaagcaaagtagtaatttttttggcaaccctagtgcata |
39399609 |
T |
|
| Q |
120 |
tgacaata |
127 |
Q |
| |
|
|||||||| |
|
|
| T |
39399608 |
tgacaata |
39399601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 25912567 - 25912734
Alignment:
| Q |
18 |
aaggagtgaagggtgcattccagtactgatcagactttaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtaca |
117 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||| |||||||| || |||||||||||||||||||| |||||||||||||||||||||||||| || |
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|
| T |
25912567 |
aaggcgtgaagggtgcattccagtactgatcagccttcaagaaacaatgagtcaaggtaaatggatcaagtaaagtaaatgttttggcaaccctagtgca |
25912666 |
T |
|
| Q |
118 |
aatgacaataggaccaatatttggaccgaaagaagcagcaatatgactaggcagaataatcaaatccc |
185 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||| || | |||||||| ||||||||||| |
|
|
| T |
25912667 |
aatgacaataggaccaatatttacactgaaagaagcagcaacattaggaggcagaaaaatcaaatccc |
25912734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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