View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13808_low_6 (Length: 634)
Name: NF13808_low_6
Description: NF13808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13808_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 562; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 10 - 611
Target Start/End: Original strand, 52584618 - 52585220
Alignment:
| Q |
10 |
gacatcatcaattgtagctagcnnnnnnngtctgagagaaagtgattgaaaaaataaactagttctatacttgtattgtattgtgtcccttaagggaaca |
109 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52584618 |
gacatcattaattgtagctagctttttttgtctgagagaaagtgattgaataaataaactagttctatacttgtattgtattgtgtcccttaagggaaca |
52584717 |
T |
|
| Q |
110 |
actcaattggaaaaatgaagcatgtgagttttgtgatgtggatctctctagaacagtgaaagaagagagatttttatggaaaaagagaaaaggagtgaaa |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
52584718 |
actcaattggaaaaatgaagcatgtgagttttgtgatgtggatctctctagaacagtgaaagaagagagatttttatggaaaaggagaaaaggagtgaaa |
52584817 |
T |
|
| Q |
210 |
gggggaatcgaatcgaatcgaatcaacactgttttttacgtactgaagaaactatttgagcaaaaaagctagtatagtatatattctgaagacatgagtt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52584818 |
gggggaatcgaatcgaatcgaatcaacactgttttttacgtactgaagaaactatttgagcaaaaaagctagtatagtatatattctgaagacatgagtt |
52584917 |
T |
|
| Q |
310 |
aataagacattaacatagaagtggtgaatccgtactaggtgcacgaagccctattgaggttgagcagtggattcattggtgagcataatcagtggtcaca |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52584918 |
aataagacattaacatagaagtggtgaatccgtactaggtgcacgaagccctattgaggttgagcagtggattcattggtgagcataatcagtggtcaca |
52585017 |
T |
|
| Q |
410 |
atcaaatcccaagtttcatgtttgaatattgcagctctagtattcagtaagataaatgtgatagctc-aaactaacttggaggagtactattactataca |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
52585018 |
atcaaatcccaagtttcatgtttgaatattgcagctctagtattcagtaagataaatgtgatagctcaaaactaacttggaggagtactattactataca |
52585117 |
T |
|
| Q |
509 |
ctgcacatgccaaaatcatacttaaatttatgaccacttgggatatggtgtcaaaacaaggtagattgtgttaggatttaagagaactgatttgtgaaag |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52585118 |
ctgcacatgccaaaatcatacttaaatttatgaccacttgggatatggtgtcaaaacaaggtagattgtgttaggatttaagagaactgatttgtgaaag |
52585217 |
T |
|
| Q |
609 |
agt |
611 |
Q |
| |
|
||| |
|
|
| T |
52585218 |
agt |
52585220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University