View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13808_low_8 (Length: 604)
Name: NF13808_low_8
Description: NF13808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13808_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 39 - 592
Target Start/End: Complemental strand, 52443959 - 52443394
Alignment:
| Q |
39 |
aaatgcatgcgagtatatattgatttaacaatgatgaaactagtataaattagatggtagaattgnnnnnnnntaa------gtaattatgggtgatggt |
132 |
Q |
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| T |
52443959 |
aaatgtatgtgagtatatattgatttaacaatgatgaaactagtataaattagatggtagaattgaaagaaaaaaaaaagaagtaattatgggtaatggt |
52443860 |
T |
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| Q |
133 |
gattatgctgggttctttttcaatttggattcaattagctggcttaagttgggtttgtctggcatcaccagtatttctgactacattggtaacaatgatt |
232 |
Q |
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| T |
52443859 |
gattatgctgggttctttttcaatttggattcaattagctggcttaagtggggtttgtctaacatcaccagtatttctgactacattggtaacggtgatt |
52443760 |
T |
|
| Q |
233 |
atgttgagttatttgaaaaaattcaatatttttgcaacaggcatttagtgggcttggcgtaatcgtaattcttctagcatcaccaatgtagcaatcccac |
332 |
Q |
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| T |
52443759 |
atgttgagttatttgaaaaaattcagtatttttgcaacaggcatttagtgggcttggcgtaatcgcaattcttctagcatcaccaatgtagcaatcccat |
52443660 |
T |
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| Q |
333 |
aataccaccttatgatcgaaccccataatacgacttctacattcatccccttgcttccccgattatctttgggcaagccattgttgaactccatgcaata |
432 |
Q |
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| T |
52443659 |
aataccaccttatgatcgaaccccataatacgacttatacatttatccccttgcttccccgattatctttgggcaagccattgttgaactccatgcaata |
52443560 |
T |
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| Q |
433 |
gatctagtgcttttgttggctaaacaattgaataaccattacttgttacacataatctcttcactgtgttgataccctccatttttaaataccaagattt |
532 |
Q |
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| T |
52443559 |
gatcaagtgcttttgttggctaaacaattgaatcaccattacttgttacacataatctcttcactatgttgataccctccatttttaaataccaagattt |
52443460 |
T |
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| Q |
533 |
cgcaaatatgtcactttgatcgaagacat------cctccttcatcaaaatcgacatgttcatatt |
592 |
Q |
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| T |
52443459 |
cgcaaatatgtcactttgatcgaagacatcaaagacctcctccatcaaaatcgacatgttcatatt |
52443394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 424 - 471
Target Start/End: Complemental strand, 37304434 - 37304387
Alignment:
| Q |
424 |
catgcaatagatctagtgcttttgttggctaaacaattgaataaccat |
471 |
Q |
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| T |
37304434 |
catgcaatacatcaagggcttttgttggctaaacaattgaataaccat |
37304387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 470 - 558
Target Start/End: Original strand, 12299995 - 12300083
Alignment:
| Q |
470 |
attacttgttacacataatctcttcactgtgttgataccctccatttttaaataccaagatttcgcaaatatgtcactttgatcgaaga |
558 |
Q |
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| T |
12299995 |
attacttgttacacagattttcttcattgtgttgatatcctgcatgttcaaacaccaaagttttacaaatatgtcactttgatccaaga |
12300083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 474 - 562
Target Start/End: Original strand, 35797954 - 35798042
Alignment:
| Q |
474 |
cttgttacacataatctcttcactgtgttgataccctccatttttaaataccaagatttcgcaaatatgtcactttgatcgaagacatc |
562 |
Q |
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|||||| |||||| |||||||| | |||||||| ||| || || ||| ||||||||||| |||||||| |||| ||||| || ||||| |
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| T |
35797954 |
cttgttgcacatattctcttcattatgttgatatcctacaagttcaaacaccaagatttcacaaatatgacactctgatccaaaacatc |
35798042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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