View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13809_high_2 (Length: 553)

Name: NF13809_high_2
Description: NF13809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13809_high_2
NF13809_high_2
[»] chr3 (9 HSPs)
chr3 (89-535)||(11231483-11231928)
chr3 (182-299)||(31197330-31197447)
chr3 (184-299)||(31192621-31192736)
chr3 (184-299)||(52775577-52775692)
chr3 (17-88)||(11232305-11232376)
chr3 (182-299)||(52770869-52770986)
chr3 (374-424)||(11243664-11243714)
chr3 (478-533)||(11243468-11243523)
chr3 (424-465)||(11243595-11243635)
[»] chr8 (1 HSPs)
chr8 (16-184)||(17514019-17514182)
[»] scaffold0014 (2 HSPs)
scaffold0014 (182-299)||(97974-98091)
scaffold0014 (183-299)||(93337-93453)
[»] chr7 (2 HSPs)
chr7 (182-299)||(16254356-16254473)
chr7 (184-299)||(16259066-16259181)
[»] chr4 (4 HSPs)
chr4 (182-299)||(13985826-13985943)
chr4 (183-299)||(13990464-13990580)
chr4 (129-183)||(18983443-18983497)
chr4 (18-183)||(2671207-2671367)
[»] scaffold0013 (2 HSPs)
scaffold0013 (183-299)||(244968-245084)
scaffold0013 (182-254)||(251091-251163)
[»] chr6 (6 HSPs)
chr6 (182-299)||(26129076-26129193)
chr6 (102-184)||(1092000-1092082)
chr6 (18-73)||(1092469-1092524)
chr6 (186-290)||(29155892-29155996)
chr6 (184-299)||(26135990-26136106)
chr6 (156-184)||(34246669-34246697)
[»] chr5 (6 HSPs)
chr5 (102-184)||(16748222-16748305)
chr5 (186-292)||(30682527-30682633)
chr5 (89-181)||(29735700-29735793)
chr5 (18-177)||(37344214-37344369)
chr5 (186-292)||(30054701-30054807)
chr5 (187-235)||(30430880-30430928)
[»] chr1 (1 HSPs)
chr1 (189-281)||(13426843-13426935)
[»] scaffold0321 (1 HSPs)
scaffold0321 (131-184)||(1933-1986)


Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 89 - 535
Target Start/End: Complemental strand, 11231928 - 11231483
Alignment:
Q  89 tgatatctcttggaaataaataagcaaactatgcatagtcaaatttaataatggaatcaaaattttcagctcttgaatttgcaggtcaagaagcatgtta 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11231928 tgatatctcttggaaataaataagcaaactatgcatagtcaaatttaataatggaatcaaaattctcagctcttgaatttgcaggtcaagaagcatgtta 11231829  T
Q  189 aacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagagaaatcgagagaaaattctagattcattgaattgatat 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11231828 aacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagagaaatcgagagaaaattctagattcattgaattgatat 11231729  T
Q  289 gaaaacggttaattttcatgcaatgattatcaaattgagcaaaacaagactcacaccaaaatttactttcacaattctaaaactatgttaaattattaat 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11231728 gaaaacggttaattttcatgcaatgattatcaaattgagcaaaacaagactcacaccaaaatttactttcacaattctaaaactatgttaaattattaat 11231629  T
Q  389 caataatgagaagataatgaaactcaatttttgtattcagaatccatgcaattcaattccaaacacttccacattctcatatcgcaacgagttatccatt 488  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11231628 caataatgagaagataatgaaactcaatttttgtattcagaatccatgcaattcaatt-caaacacttccacattctcatatcgcaacgagttatccatt 11231530  T
Q  489 tctgcgtatgattctcaattttatgataatatttcacttgcatgtta 535  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||    
T  11231529 tctgtgtatgattctcaattttatgataatatttcacttgcatgtta 11231483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 182 - 299
Target Start/End: Original strand, 31197330 - 31197447
Alignment:
Q  182 catgttaaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattga 280  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |||| |||| ||||  |||||||||||||    
T  31197330 catgttaaacttcaccatatccatggtggaagttgaagaaatgcagaagcttaacaaagaagaaagagagaaaattgagataaaa-gctagattcattga 31197428  T
Q  281 attgatatgaaaacggtta 299  Q
    ||||| | |||||||||||    
T  31197429 attgagaagaaaacggtta 31197447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 184 - 299
Target Start/End: Original strand, 31192621 - 31192736
Alignment:
Q  184 tgttaaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattgaat 282  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |||| |||| ||||  |||||||||||||||    
T  31192621 tgttaaacttcaccatatccatggtggaagttgaagaaatgcagaagcttaacaaagaagaaagagagaaaattgagataaaa-gctagattcattgaat 31192719  T
Q  283 tgatatgaaaacggtta 299  Q
    ||| | |||||||||||    
T  31192720 tgagaagaaaacggtta 31192736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 184 - 299
Target Start/End: Complemental strand, 52775692 - 52775577
Alignment:
Q  184 tgttaaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattgaat 282  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |||| |||| ||||  |||||||||||||||    
T  52775692 tgttaaacttcaccatatccatggtggaagttgaagaaatgcagaagcttaacaaagaagaaagagagaaaattgagataaaa-gctagattcattgaat 52775594  T
Q  283 tgatatgaaaacggtta 299  Q
    ||| | |||||||||||    
T  52775593 tgagaagaaaacggtta 52775577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 11232376 - 11232305
Alignment:
Q  17 ataaattggatctcaaataaagacgaggtaggtttcgttgtgaagtacttatttatctcatgatgatgtgat 88  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11232376 ataaattggatctcaaatagagacgaggtaggtttcgttgtgaagtacttatttatctcatgatgatgtgat 11232305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 182 - 299
Target Start/End: Complemental strand, 52770986 - 52770869
Alignment:
Q  182 catgttaaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattga 280  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |||| |||| ||||  |||||||||||||    
T  52770986 catgttaaacttcaccatatccatggtggaagttgaagaaatgcagaagcttaacaaagaagaaagagagaaaattgagataaaa-gctagattcattga 52770888  T
Q  281 attgatatgaaaacggtta 299  Q
    ||| | | |||||||||||    
T  52770887 atttagaagaaaacggtta 52770869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 374 - 424
Target Start/End: Complemental strand, 11243714 - 11243664
Alignment:
Q  374 tgttaaattattaatcaataatgagaagataatgaaactcaatttttgtat 424  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11243714 tgttaaattattaatcaataatgagaagataatgaaactcactttttgtat 11243664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 478 - 533
Target Start/End: Complemental strand, 11243523 - 11243468
Alignment:
Q  478 agttatccatttctgcgtatgattctcaattttatgataatatttcacttgcatgt 533  Q
    ||||||||| ||||| ||||||||||||||||| | ||| || |||||||||||||    
T  11243523 agttatccagttctgtgtatgattctcaattttctaatactaattcacttgcatgt 11243468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 465
Target Start/End: Complemental strand, 11243635 - 11243595
Alignment:
Q  424 ttcagaatccatgcaattcaattccaaacacttccacattct 465  Q
    |||||||||||| |||||||||| ||||||||||||||||||    
T  11243635 ttcagaatccatacaattcaatt-caaacacttccacattct 11243595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 8e-47; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 17514019 - 17514182
Alignment:
Q  16 cataaattggatctcaaataaagacgaggtaggtttcgttgtgaagtacttatttatctcatgatgatgtgattgatatctcttggaaataaataagcaa 115  Q
    ||||||||||||||||||||||||| ||||||||| | |||| |||||||||||||| ||||||||||||||     ||||||| |||||||||||||||    
T  17514019 cataaattggatctcaaataaagacaaggtaggttccattgtaaagtacttatttatttcatgatgatgtgac----atctcttcgaaataaataagcaa 17514114  T
Q  116 actatgcatagtcaaatttaataatggaatcaaaattttcagctcttgaatttgcaggtcaagaagcat 184  Q
    | ||||||||||||||||||| ||||||||||||||| | |||| || |||||||||||||||||||||    
T  17514115 attatgcatagtcaaatttaa-aatggaatcaaaattgttagctattaaatttgcaggtcaagaagcat 17514182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 71; Significance: 7e-32; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 182 - 299
Target Start/End: Original strand, 97974 - 98091
Alignment:
Q  182 catgttaaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattga 280  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |||| |||| ||||  |||||||||||||    
T  97974 catgttaaacttcaccatatccatggtggaagttgaagaaatgcagaagcttaacaaagaagaaagagagaaaattgagataaaa-gctagattcattga 98072  T
Q  281 attgatatgaaaacggtta 299  Q
    ||||| | |||||||||||    
T  98073 attgagaagaaaacggtta 98091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 183 - 299
Target Start/End: Original strand, 93337 - 93453
Alignment:
Q  183 atgttaaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattgaa 281  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |||| |||| ||||  ||||||||||||||    
T  93337 atgttaaacttcaccatatccatggtggaagttgaagaaatgcagaagcttaacaaagaagaaagagagaaaattgagataaaa-gctagattcattgaa 93435  T
Q  282 ttgatatgaaaacggtta 299  Q
    |||| | |||||||||||    
T  93436 ttgagaagaaaacggtta 93453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 7e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 182 - 299
Target Start/End: Complemental strand, 16254473 - 16254356
Alignment:
Q  182 catgttaaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagagaaa-tcgagagaaaattctagattcattga 280  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |  ||| ||||  |||||||||||||    
T  16254473 catgttaaacttcaccatatccatggtgaaagttgaagaaatgcagaagcttaacaaagaagaaagagagaaaatttagataaaag-ctagattcattga 16254375  T
Q  281 attgatatgaaaacggtta 299  Q
    ||||| | |||||||||||    
T  16254374 attgagaagaaaacggtta 16254356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 184 - 299
Target Start/End: Complemental strand, 16259181 - 16259066
Alignment:
Q  184 tgttaaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattgaat 282  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||| |||| |||| ||||  |||||||||||||||    
T  16259181 tgttaaacttcaccatatccatggtgaaagttgaagaaatgaagaagcttaacaaagaagaaagagagaaaattgagataaaa-gctagattcattgaat 16259083  T
Q  283 tgatatgaaaacggtta 299  Q
    ||| | |||||||||||    
T  16259082 tgagaagaaaacggtta 16259066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 7e-32; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 182 - 299
Target Start/End: Complemental strand, 13985943 - 13985826
Alignment:
Q  182 catgttaaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattga 280  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |||| |||| ||||  |||||||||||||    
T  13985943 catgttaaacttcaccatatccatggtggaagttgaagaaatgcagaagcttaacaaagaagaaagagagaaaattgagataaaa-gctagattcattga 13985845  T
Q  281 attgatatgaaaacggtta 299  Q
    ||||| | |||||||||||    
T  13985844 attgagaagaaaacggtta 13985826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 183 - 299
Target Start/End: Complemental strand, 13990580 - 13990464
Alignment:
Q  183 atgttaaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattgaa 281  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |||| |||| ||||  ||||||||||||||    
T  13990580 atgttaaacttcaccatatccatggtggaagttgaagaaatgcagaagcttaacaaagaagaaagagagaaaattgagataaaa-gctagattcattgaa 13990482  T
Q  282 ttgatatgaaaacggtta 299  Q
    |||| | |||||||||||    
T  13990481 ttgagaagaaaacggtta 13990464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 183
Target Start/End: Complemental strand, 18983497 - 18983443
Alignment:
Q  129 aaatttaataatggaatcaaaattttcagctcttgaatttgcaggtcaagaagca 183  Q
    ||||||| ||||| |||||||| ||||||||||||||||||||| ||| ||||||    
T  18983497 aaatttactaatgaaatcaaaagtttcagctcttgaatttgcagatcatgaagca 18983443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 2671367 - 2671207
Alignment:
Q  18 taaattggatctcaaataaagacgaggtaggtttcgttgtgaagtacttatttatctcatgatgatgtgattgatatctcttggaaataaataa-gcaaa 116  Q
    |||||| ||||| ||||||||||  |||| ||| | ||  ||||||||| ||||| |||| |||||||| |    |||||| |||||||||||| ||| |    
T  2671367 taaattcgatctaaaataaagacagggtaagttccattacgaagtacttgtttatttcattatgatgtggt----atctctaggaaataaataaagcata 2671272  T
Q  117 ctatgcatagtcaaatttaataatggaatcaaaattttcagctcttgaatttgcaggtcaagaagca 183  Q
     ||||| | ||||||||||  |||| ||||||||||  ||||| |||| |||||| |||||||||||    
T  2671271 -tatgctt-gtcaaatttaccaatgaaatcaaaattcgcagctattgactttgcaagtcaagaagca 2671207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 183 - 299
Target Start/End: Original strand, 244968 - 245084
Alignment:
Q  183 atgttaaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattgaa 281  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |||| |||| ||||  ||||||||||||||    
T  244968 atgttaaacttcaccatatccatggtggaagttgaagaaatgcagaagcttaacaaagaagaaagagagaaaattgagataaaa-gctagattcattgaa 245066  T
Q  282 ttgatatgaaaacggtta 299  Q
    |||| | |||||||||||    
T  245067 ttgagaagaaaacggtta 245084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 182 - 254
Target Start/End: Original strand, 251091 - 251163
Alignment:
Q  182 catgttaaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagagaaa 254  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||    
T  251091 catgttaaacttcaccatatccatggtggaagttgaagaaatgcagaagcttaacaaagaagaaagagagaaa 251163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 182 - 299
Target Start/End: Complemental strand, 26129193 - 26129076
Alignment:
Q  182 catgttaaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattga 280  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||| |||| |||| ||||  |||||||||| ||    
T  26129193 catgttaaacttcaccatatccatggtgaaagttgaagaaatgcagaagcttaacaaagaagaaggagagaaaattgagataaaa-gctagattcataga 26129095  T
Q  281 attgatatgaaaacggtta 299  Q
    ||||| | |||||||||||    
T  26129094 attgagaagaaaacggtta 26129076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 102 - 184
Target Start/End: Complemental strand, 1092082 - 1092000
Alignment:
Q  102 aaataaataagcaaactatgcatagtcaaatttaataatggaatcaaaattttcagctcttgaatttgcaggtcaagaagcat 184  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||||| ||| |  ||||||||||||||||||||||||    
T  1092082 aaataaataagcgaactatgcatagtcaaatttactaatggaatcaaaattctcaccctttgaatttgcaggtcaagaagcat 1092000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 1092524 - 1092469
Alignment:
Q  18 taaattggatctcaaataaagacgaggtaggtttcgttgtgaagtacttatttatc 73  Q
    ||||||||||||||||||||||||||||||||| | |||| |||||||||||||||    
T  1092524 taaattggatctcaaataaagacgaggtaggttccattgtcaagtacttatttatc 1092469  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 186 - 290
Target Start/End: Original strand, 29155892 - 29155996
Alignment:
Q  186 ttaaacttcaccatatccatggtgaaagtaga-agaaatgcagaagcttaacaaggaagaaagagagaaatcgagagaaaattctagattcattgaattg 284  Q
    |||||||||||| ||||||||||| || |||| | |||||||||| |||||  | |||||||||||||||   |||||||| ||||||||||||||||||    
T  29155892 ttaaacttcaccgtatccatggtggaattagagaaaaatgcagaaacttaaggaagaagaaagagagaaagatagagaaaa-tctagattcattgaattg 29155990  T
Q  285 atatga 290  Q
    | ||||    
T  29155991 aaatga 29155996  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 184 - 299
Target Start/End: Complemental strand, 26136106 - 26135990
Alignment:
Q  184 tgttaaacttcaccatat---ccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagag-aaatcgagagaaaattctagattcattg 279  Q
    |||||||||||||| |||   |||||||||| || ||||||||||||||||||| ||| |||||||||||| |||| |||| ||||  |||||||||| |    
T  26136106 tgttaaacttcaccctattttccatggtgaa-gt-gaagaaatgcagaagcttaccaaagaagaaagagagaaaattgagataaaa-gctagattcatag 26136010  T
Q  280 aattgatatgaaaacggtta 299  Q
    |||||| | |||||||||||    
T  26136009 aattgagaagaaaacggtta 26135990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 156 - 184
Target Start/End: Original strand, 34246669 - 34246697
Alignment:
Q  156 agctcttgaatttgcaggtcaagaagcat 184  Q
    |||||||||||||||||||||||||||||    
T  34246669 agctcttgaatttgcaggtcaagaagcat 34246697  T

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Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 102 - 184
Target Start/End: Original strand, 16748222 - 16748305
Alignment:
Q  102 aaataaataa-gcaaactatgcatagtcaaatttaataatggaatcaaaattttcagctcttgaatttgcaggtcaagaagcat 184  Q
    |||||||||| ||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  16748222 aaataaataaagcaaagtatgcatagtcaaatttactaatggaatcaaaattctcagctcttgaatttgcaggtcaagaagcat 16748305  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 186 - 292
Target Start/End: Complemental strand, 30682633 - 30682527
Alignment:
Q  186 ttaaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagagaaatcgagagaaaattctagattcattgaattga 285  Q
    |||||||||||||||||||||||| ||  |||  ||||||||||| | ||  | |||||||||||||||   ||||||||||||||||||||||||||||    
T  30682633 ttaaacttcaccatatccatggtggaatcagagaaaatgcagaagttcaatgaagaagaaagagagaaaattagagaaaattctagattcattgaattga 30682534  T
Q  286 tatgaaa 292  Q
    | |||||    
T  30682533 tctgaaa 30682527  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 89 - 181
Target Start/End: Complemental strand, 29735793 - 29735700
Alignment:
Q  89 tgatatctcttggaaataaat-aagcaaactatgcatagtcaaatttaataatggaatcaaaattttcagctcttgaatttgcaggtcaagaag 181  Q
    ||||||||||||||||||||| ||| ||| ||   ||||||||||||| ||||||||||||||||||  |||||||||||||||| ||||||||    
T  29735793 tgatatctcttggaaataaattaagtaaaatacatatagtcaaatttactaatggaatcaaaattttatgctcttgaatttgcagatcaagaag 29735700  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 37344369 - 37344214
Alignment:
Q  18 taaattggatctcaaataaagacgaggtaggtttcgttgtgaagtacttatttatctcatgatgatgtgattgatatctcttggaaataaat-aagcaaa 116  Q
    ||||||||||||| |||||||| |||||  ||| | ||| |||| |||||||||| ||| |||||||    |||||| |||||||||||||| |||||||    
T  37344369 taaattggatctccaataaagatgaggtgagttccattgcgaagcacttatttatttcacgatgatg----tgatatttcttggaaataaataaagcaaa 37344274  T
Q  117 ctatgcatagtcaaatttaataatggaatcaaaattttcagctcttgaatttgcaggtcaa 177  Q
     ||||  |||||| ||||| ||||| ||||||||||   |||||||||||||| |||||||    
T  37344273 -tatgtgtagtcatatttactaatgaaatcaaaattcatagctcttgaatttgaaggtcaa 37344214  T

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Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 186 - 292
Target Start/End: Original strand, 30054701 - 30054807
Alignment:
Q  186 ttaaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagagaaatcgagagaaaattctagattcattgaattga 285  Q
    |||||||||||||||||||||||| ||  |||  ||||||||||||| ||| |  ||||||||||||||   |||  |||||||||||||||||||||||    
T  30054701 ttaaacttcaccatatccatggtggaatcagagaaaatgcagaagctcaacgaaaaagaaagagagaaaattagatcaaattctagattcattgaattga 30054800  T
Q  286 tatgaaa 292  Q
    | |||||    
T  30054801 tctgaaa 30054807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 30430880 - 30430928
Alignment:
Q  187 taaacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaa 235  Q
    ||||||||||||||||||||||| ||  |||  ||||||||||||||||    
T  30430880 taaacttcaccatatccatggtggaatcagagaaaatgcagaagcttaa 30430928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 189 - 281
Target Start/End: Original strand, 13426843 - 13426935
Alignment:
Q  189 aacttcaccatatccatggtgaaagtagaagaaatgcagaagcttaacaaggaagaaagagagaaatcgagagaaaattctagattcattgaa 281  Q
    ||||||||||||||||||||| ||  |||  ||||| |||| ||||   | |||||||||||||||    |||||||||||||||||||||||    
T  13426843 aacttcaccatatccatggtggaatcagagaaaatgaagaaacttagggaagaagaaagagagaaaattggagaaaattctagattcattgaa 13426935  T

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Target: scaffold0321 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 1933 - 1986
Alignment:
Q  131 atttaataatggaatcaaaattttcagctcttgaatttgcaggtcaagaagcat 184  Q
    ||||| ||||| |||||||| |   |||||||||||||||||||||||||||||    
T  1933 atttactaatgaaatcaaaaatcatagctcttgaatttgcaggtcaagaagcat 1986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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