View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13809_low_1 (Length: 681)
Name: NF13809_low_1
Description: NF13809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13809_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 350 - 672
Target Start/End: Complemental strand, 33827238 - 33826915
Alignment:
| Q |
350 |
gttgtttacatatgtttcctccattgcgatctttaaacacatacannnnnnnnccgttcgaactttaattcattacaatcataaattaattataaacgat |
449 |
Q |
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| T |
33827238 |
gttgtttacatatgtttcctccattgcgatctttaaacacatatattttttttccattcgaactttaattcgtcacaatcataaattaattataaacgat |
33827139 |
T |
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| Q |
450 |
ttttgctattttttaaagaagttaaacaagtccactaaaattgacgatttcaactattaatctcttaatctaatgatccatttatctcttgatctcattt |
549 |
Q |
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| T |
33827138 |
ttttgctattttttaaagaagttaaacaagtccactaaaattgacgatttcaactattaatctcttaatctaatggtccatttatctcttgatctcattt |
33827039 |
T |
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| Q |
550 |
cccctctctctcttcaagtg-aaacataattgtgtgggctcgaatcttttatgtaccttttgctacctccaaactcaccgaaggttgnnnnnnncctcat |
648 |
Q |
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| T |
33827038 |
cccctctctctcttcaagtgaaaacataattgtgtgggctcgaatcttttatgtaccttttgctacctccaaactcaccgaaggttgaaaaaaacctcat |
33826939 |
T |
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| Q |
649 |
tcaatttcctatttcttttctctc |
672 |
Q |
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|||||||||||||||||||||||| |
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| T |
33826938 |
tcaatttcctatttcttttctctc |
33826915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 15 - 284
Target Start/End: Complemental strand, 33827573 - 33827304
Alignment:
| Q |
15 |
agattattcattgcaattgaacttcataaaactcctatcaatctgtttggtttgacggtgtgtttttcaaactcatggtttatagatgtaaaaaagaaga |
114 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33827573 |
agattactcattgcaattgaacttcataaaactcctatcaatctgtttgatttgatggtgtgtttttcaaactcatggtttatagatgtaaaaaaggaga |
33827474 |
T |
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| Q |
115 |
agctccaaaagtaactttcaccctaacgcaaatttctgctgcgctttcaccaactctacaccatgccaaatacatgctacgtcatcaaaattttgtcaaa |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33827473 |
agctccaaaagtaactttcaccctaacgcaaatttctgccgcactttcaccaactctacaccatgtcaaatacatgctacgtcatcaaaattttgtcaaa |
33827374 |
T |
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| Q |
215 |
ctcgtcacaaatttaaacatgcattaggttattacaaatttagatatgcaataaatgtgttgggcattgt |
284 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33827373 |
ctcgtcacaaatttaaacatgcattaagttattacaaatttagatatgcaataaatttgttgggcattgt |
33827304 |
T |
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