View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13809_low_10 (Length: 349)
Name: NF13809_low_10
Description: NF13809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13809_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 160 - 332
Target Start/End: Original strand, 9598330 - 9598502
Alignment:
| Q |
160 |
ccaattgaaataacatcaataaaaataacaacataaaattttagaaaacattagtttgataaactaagtgaagccatcttgtcatcaatttccttcatan |
259 |
Q |
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|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
9598330 |
ccaattgaaataacatcagtaaaaataacaacataaagttttagaaaacattagtttgataaactaagtgaagccatcttgtcatcaatttccttcagat |
9598429 |
T |
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| Q |
260 |
nnnnnncaatcaacttatccaagtctttcaaatcagaaactgtcacatcatctggaagcttgttgttttgtag |
332 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9598430 |
ttttttcaatcaacttatccaagtctttcaaatcagaaactgtcacatcatctggaagcttgttgttttgtag |
9598502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 9598181 - 9598291
Alignment:
| Q |
11 |
taattctagatcagattcatgattagttctttatcaataagaaaaattgataatgtcaaataaaacattgaaaaacacaaattagaacaagcgaaagact |
110 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
9598181 |
taattctagatcagattcaggattagttctttatcaataagaaaaattgataatgtcaaataaaacattgaaaaacacaaaatagaacaagcgaaagact |
9598280 |
T |
|
| Q |
111 |
ggtgatatata |
121 |
Q |
| |
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||||||||||| |
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| T |
9598281 |
ggtgatatata |
9598291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 160 - 329
Target Start/End: Original strand, 3316936 - 3317104
Alignment:
| Q |
160 |
ccaattgaaataacatcaataaaaataacaacataaaattttagaaaacattagtttgataaactaagtgaagccatcttgtcatcaatttccttcatan |
259 |
Q |
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|||||||||||||||||||||||||| |||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3316936 |
ccaattgaaataacatcaataaaaatcacaacataaa-ttttagaaaacatcaatttgataaactaagtgaagccatcttgtcatcaatttccttcatat |
3317034 |
T |
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| Q |
260 |
nnnnnncaatcaacttatccaagtctttcaaatcagaaactgtcacatcatctggaagcttgttgttttg |
329 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
3317035 |
ttttttcaattaacttatccaagtctttcaaatcagaaacggtcacatcatctggcagcttgttgttttg |
3317104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 3316784 - 3316894
Alignment:
| Q |
11 |
taattctagatcagattcatgattagttctttatcaataagaaaaattgataatgtcaaataaaacattgaaaaacacaaattagaacaagcgaaagact |
110 |
Q |
| |
|
||||||||||||||||||| ||| | ||||||||||| ||||||||||||| || | |||| || ||||||| ||||||| ||||||||| |||| ||| |
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| T |
3316784 |
taattctagatcagattcaggatcaattctttatcaacaagaaaaattgatgatattaaatcaagcattgaagcacacaaaatagaacaagagaaaaact |
3316883 |
T |
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| Q |
111 |
ggtgatatata |
121 |
Q |
| |
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|||||||||| |
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| T |
3316884 |
agtgatatata |
3316894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 160 - 329
Target Start/End: Original strand, 34498446 - 34498615
Alignment:
| Q |
160 |
ccaattgaaataacatcaataaaaataacaacataaaattttagaaaacattagtttgataaactaagtgaagccatcttgtcatcaatttccttcatan |
259 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34498446 |
ccaattgaaataacatcaataaaaatcacaacataaggttttagaaaacatcagtttgataaactaagtgaagccatcttgtcatcaatttctttcatat |
34498545 |
T |
|
| Q |
260 |
nnnnnncaatcaacttatccaagtctttcaaatcagaaactgtcacatcatctggaagcttgttgttttg |
329 |
Q |
| |
|
||| ||||||||||||||| ||||||||||||| |||| ||||||||| | | |||||||||| |
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| T |
34498546 |
tttttgtaattaacttatccaagtctctcaaatcagaaacagtcatatcatctggcaccgtgttgttttg |
34498615 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 34498294 - 34498404
Alignment:
| Q |
11 |
taattctagatcagattcatgattagttctttatcaataagaaaaattgataatgtcaaataaaacattgaaaaacacaaattagaacaagcgaaagact |
110 |
Q |
| |
|
||||||||||| ||||||| ||| ||||||||||||| || |||||||||| |||| | || || ||||||| ||||||| |||||||| ||||| ||| |
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| T |
34498294 |
taattctagattagattcaggatcagttctttatcaacaaaaaaaattgatgatgttagatcaagcattgaagcacacaaaatagaacaaacgaaaaact |
34498393 |
T |
|
| Q |
111 |
ggtgatatata |
121 |
Q |
| |
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||||||||||| |
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| T |
34498394 |
ggtgatatata |
34498404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 258
Target Start/End: Original strand, 34484356 - 34484451
Alignment:
| Q |
163 |
attgaaataacatcaataaaaataacaacataaaattttagaaaacattagtttgataaactaagtgaagccatcttgtcatcaatttccttcata |
258 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||| ||||||| ||||| | | |||||||||||||| | ||||| ||||| | |||||||||| |
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| T |
34484356 |
attgaaataacatcaatcaaaatcacaacataaagttttagagaacatcaatctgataaactaagtgcgacaatcttttcatccaattccttcata |
34484451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 257
Target Start/End: Original strand, 34520055 - 34520141
Alignment:
| Q |
171 |
aacatcaataaaaataacaacataaaattttagaaaacattagtttgataaactaagtgaagccatcttgtcatcaatttccttcat |
257 |
Q |
| |
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||||||||| ||||| |||||||||| ||| ||| |||| | ||| ||||||| |||| | | |||||||||||||| |||||||| |
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| T |
34520055 |
aacatcaatcaaaatcacaacataaagtttaagacaacaacaatttcataaactgagtgcaacaatcttgtcatcaatctccttcat |
34520141 |
T |
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