View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13809_low_2 (Length: 645)
Name: NF13809_low_2
Description: NF13809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13809_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 575; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 41 - 627
Target Start/End: Original strand, 35498618 - 35499204
Alignment:
| Q |
41 |
ttatatcaaatatagattaggcacctcctcgtcactttcatcttcaccagcttcatttctgatgcgctcaagatgtggatcaacagcatcatcatcatca |
140 |
Q |
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| T |
35498618 |
ttatatcaaatatagattaggcacctcctcgtcactttcatcttcaccagcttcatttctgatgcgctcaagatgtggatcaacagcatcatcatcatca |
35498717 |
T |
|
| Q |
141 |
ccctcaagaaccttagccacaccagtagttggttgggcatctcctaaattcataattttcaagccctttgaactgcatgttcaggtaaggaatgagttgt |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35498718 |
ccctcaagaaccttagccacaccagtagttggttgggcatctcctaaattcataattttcaagccctttgaactgcatgttcaggtaaggaatgagttgt |
35498817 |
T |
|
| Q |
241 |
ttatatgacaaacaactagttgccaagtaaaatttggcaatgaggtaacatttacctgataaaaccatacaaattgtggtactcgtttctctgaatatta |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35498818 |
ttatatgacaaacaactagttgccaagtaaaatttggcaatgaggtaacatttacctgataaaaccatacaaattgtggtactcgtttctctgaatatta |
35498917 |
T |
|
| Q |
341 |
cgaaagaggtgctcttggtcagattttagtctgataagaaggtcaaaataatgcatatttgacccaccagcagcatgtcgctcaaattccacatagtcaa |
440 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
35498918 |
cgaaagaggtgctcttggtcagattttagtctgataagaaggtcaaaataatgcatatttgacccaccagcagcatgtcgctcaaactccacatagtcaa |
35499017 |
T |
|
| Q |
441 |
tctagtcagaaacaacgaaacaatcaaaacctctaacaggtgatatcatgcatgacagccagtatttaatatatgatagtcagtaaacagaactcaaatt |
540 |
Q |
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| T |
35499018 |
tctagtcagaaacaacgaaacaatcaaaacctctaacaggtgatatcatgcatgacaaccagtatttaatatatgatggtcagtaaacagaactcaaatt |
35499117 |
T |
|
| Q |
541 |
tcacctcttcatgagtaataagagtgggaggtttaggtagaaagaagaagctcttctcaaggggatacaaaattccatcttcagctt |
627 |
Q |
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| T |
35499118 |
tcacctcttcatgagtaataagagtgggaggtttaggtagaaagaagaagctcttctcaaggggatacaaaattccatcttcagctt |
35499204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 54 - 446
Target Start/End: Complemental strand, 7072971 - 7072581
Alignment:
| Q |
54 |
agattaggcacctcctcgtcactttcatcttcaccagcttcatttctgatgcgctcaagatgtggatcaacagcatcatcatcatcaccctcaagaacct |
153 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| || ||||||||||||||| |||||| |||| |
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| T |
7072971 |
agattaggcacctcctcgtcactttcatctccaccagcttcatttctgatgcgctcgagatgtggatcgacggcatcatcatcatcattctcaagcacct |
7072872 |
T |
|
| Q |
154 |
tagccacaccagtagttggttgggcatctcctaaattcataattttcaagccctttgaactgcatgttcaggtaaggaatgagttgtttatatgacaaac |
253 |
Q |
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| ||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||| | | ||| ||| || | | |||||| |
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| T |
7072871 |
tggccacaccaacagttggttgggcatcagctaaattcataattttcaagcccttagaactgcatgtgcaggacaaaagtgaattgcttgtgtaacaaac |
7072772 |
T |
|
| Q |
254 |
aactagttgccaagtaaaatttggcaatgaggtaacatttacctgataaaaccatacaaattgtggtactcgtttctctgaatattacgaaagaggtgct |
353 |
Q |
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|| || || | |||| ||||||| |||| ||| |||||||||||||||||||||||||||||||| || |||||||||||||| || ||||| |||| |
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| T |
7072771 |
aaatatgtgtga--taaattttggcagtgagttaatatttacctgataaaaccatacaaattgtggtattcatttctctgaatatttcggaagagatgct |
7072674 |
T |
|
| Q |
354 |
cttggtcagattttagtctgataagaaggtcaaaataatgcatatttgacccaccagcagcatgtcgctcaaattccacatagtcaatctagt |
446 |
Q |
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|||| |||||||| |||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7072673 |
cttgctcagatttgagtctgataagaaggtcaaagtaatgcatgtttgaaccaccagcagcatgtcgctcaaattccacatagtcaatctagt |
7072581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 538 - 627
Target Start/End: Complemental strand, 7072478 - 7072389
Alignment:
| Q |
538 |
atttcacctcttcatgagtaataagagtgggaggtttaggtagaaagaagaagctcttctcaaggggatacaaaattccatcttcagctt |
627 |
Q |
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|||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
7072478 |
attttacctcttcatgaagaataagagtgggaggtttaggcagaaagaagaagctcttctcaagtggatacagaattccatcttcagctt |
7072389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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