View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13809_low_4 (Length: 551)
Name: NF13809_low_4
Description: NF13809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13809_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 454; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 12 - 506
Target Start/End: Original strand, 32616121 - 32616623
Alignment:
| Q |
12 |
aagaacgtgaattgaagggacaacttatttctggagtcttaagtcatgctcagaatgatatggttggtaggatgctccatgatgatggtacagctgataa |
111 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32616121 |
aagaacgtgaattgaagggacaacttatttccggagtcttaagtcatgctcagaatgatatggttggtaggatgctccatgatgatggtacagctgataa |
32616220 |
T |
|
| Q |
112 |
agatgctatcaaaaggtctgcatattta--------attacacgtatgacagtatatataaatatgttttttatgagtgttttcttgctccttgtgatgc |
203 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32616221 |
agatgctatcaaaaggtctgcatatttatatctttgattacacgtatgacaatatatataaatatgttttttatgagtgttttcttgctccttgtgatgc |
32616320 |
T |
|
| Q |
204 |
aataggttatttgagcaagttgatggcgatggcaataaccatgtttcaagatccgagttagagaaagtagttagggagactcattttggtaaggctgtag |
303 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32616321 |
aataggttatttgagcaagttgatggcgatggcgataaccatgtttcaagatccgagttagagaaagtagttagggagactcattttggtaaggctgtag |
32616420 |
T |
|
| Q |
304 |
atgcagaggaagcagtctcaaaactccttcacgatcttgatgccaacaaagacaatgagattagtgagaatgaatttgttgacggcttcaccaaatggat |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32616421 |
atgcagaggaagcagtctcaaaactccttcacgatcttgatgccaacaaagacaatgagattagtgagaatgaatttgttgatggcttcaccaaatggat |
32616520 |
T |
|
| Q |
404 |
aaactcaaattctagtaaagcaggaagctcaaaatcttcttctcatgaaactcatcaagtatttcccttattcctttactcaataacttgacatattcac |
503 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32616521 |
aaactcaaattctagtaaaccaggaagctcaaaatcttcttctcatgaaactcatcaagtatttcccttattcctttactcaataacttgacatattcac |
32616620 |
T |
|
| Q |
504 |
taa |
506 |
Q |
| |
|
||| |
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|
| T |
32616621 |
taa |
32616623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 12 - 139
Target Start/End: Original strand, 32634488 - 32634615
Alignment:
| Q |
12 |
aagaacgtgaattgaagggacaacttatttctggagtcttaagtcatgctcagaatgatatggttggtaggatgctccatgatgatggtacagctgataa |
111 |
Q |
| |
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|||| ||||||||||| | ||| ||||||||||||||||||||||||||||||| ||||| |||||||||| ||||| | ||||| |||||| ||||||| |
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| T |
32634488 |
aagagcgtgaattgaaagaacatcttatttctggagtcttaagtcatgctcagagtgatagggttggtaggctgctcaaagatgacggtacacctgataa |
32634587 |
T |
|
| Q |
112 |
agatgctatcaaaaggtctgcatattta |
139 |
Q |
| |
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||||||||||||||||||| ||| |||| |
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| T |
32634588 |
agatgctatcaaaaggtctacatgttta |
32634615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 305 - 502
Target Start/End: Original strand, 32634824 - 32635025
Alignment:
| Q |
305 |
tgcagaggaagcagtctcaaaactccttcacgatcttgatgccaacaaagacaatgagattagtgagaatgaatttgttgacggcttcaccaaatggata |
404 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| | |||||||| |||| ||||||||| |||||||||| |||||||||||| || | ||| ||| |||| |
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| T |
32634824 |
tgcagaggaagcagtcacaaaattccttcaagttcttgatgtcaacggagacaatgaaattagtgagactgaatttgttgatggtataaccgaattgata |
32634923 |
T |
|
| Q |
405 |
aactcaaattctagtaaagcaggaagctcaaaatcttcttc---tcatgaaactcatcaagtatttcccttattcctttactc-aataacttgacatatt |
500 |
Q |
| |
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|||||| ||| | | ||| | |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||| |||| |||||| |
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| T |
32634924 |
aactcatattttggacaagatgctagctcaaaatctccttctcatcatgaaactcatcaagtatttcccttattcctttactcaaatatcttgtcatatt |
32635023 |
T |
|
| Q |
501 |
ca |
502 |
Q |
| |
|
|| |
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|
| T |
32635024 |
ca |
32635025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 505 - 533
Target Start/End: Original strand, 32616699 - 32616727
Alignment:
| Q |
505 |
aatattagaaacatggatactacctacat |
533 |
Q |
| |
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||||||||||||||||||||||||||||| |
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|
| T |
32616699 |
aatattagaaacatggatactacctacat |
32616727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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