View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13809_low_5 (Length: 507)

Name: NF13809_low_5
Description: NF13809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13809_low_5
NF13809_low_5
[»] chr8 (14 HSPs)
chr8 (14-506)||(15260767-15261272)
chr8 (368-507)||(32987360-32987510)
chr8 (368-507)||(39021975-39022125)
chr8 (372-507)||(4836616-4836762)
chr8 (372-507)||(4842061-4842207)
chr8 (368-507)||(7058114-7058264)
chr8 (397-507)||(8550536-8550654)
chr8 (368-451)||(1208709-1208795)
chr8 (368-431)||(42433701-42433767)
chr8 (397-496)||(7614100-7614207)
chr8 (397-451)||(15181823-15181877)
chr8 (456-507)||(2750124-2750175)
chr8 (362-431)||(41451099-41451172)
chr8 (412-451)||(1671850-1671889)
[»] chr3 (14 HSPs)
chr3 (368-507)||(51362353-51362503)
chr3 (367-507)||(19385230-19385381)
chr3 (370-507)||(50754008-50754156)
chr3 (368-507)||(8718101-8718251)
chr3 (368-507)||(9069988-9070138)
chr3 (381-507)||(52987565-52987702)
chr3 (372-494)||(16277342-16277475)
chr3 (368-507)||(7045216-7045365)
chr3 (397-507)||(39099229-39099347)
chr3 (403-452)||(17627209-17627258)
chr3 (363-391)||(1377819-1377847)
chr3 (399-451)||(23699362-23699414)
chr3 (399-451)||(23717817-23717869)
chr3 (399-451)||(23736273-23736325)
[»] scaffold0238 (1 HSPs)
scaffold0238 (368-506)||(25148-25297)
[»] chr1 (14 HSPs)
chr1 (368-507)||(18056784-18056934)
chr1 (368-507)||(22348039-22348189)
chr1 (403-507)||(179646-179758)
chr1 (404-507)||(23320000-23320111)
chr1 (366-507)||(45889594-45889746)
chr1 (368-451)||(16115851-16115937)
chr1 (397-452)||(37639374-37639429)
chr1 (404-507)||(8402226-8402337)
chr1 (406-496)||(30802437-30802535)
chr1 (397-451)||(35198160-35198214)
chr1 (368-431)||(23921897-23921963)
chr1 (397-431)||(11421627-11421661)
chr1 (397-431)||(34369693-34369727)
chr1 (368-397)||(23320129-23320158)
[»] chr5 (9 HSPs)
chr5 (365-507)||(28070068-28070221)
chr5 (370-507)||(13362772-13362920)
chr5 (368-506)||(23335623-23335772)
chr5 (370-507)||(25017147-25017280)
chr5 (366-451)||(34329125-34329213)
chr5 (399-507)||(2826982-2827098)
chr5 (456-507)||(42512273-42512324)
chr5 (397-451)||(16668773-16668827)
chr5 (404-451)||(18465535-18465582)
[»] chr4 (17 HSPs)
chr4 (368-507)||(45255975-45256125)
chr4 (371-507)||(22181160-22181307)
chr4 (367-507)||(26447327-26447478)
chr4 (368-507)||(27764240-27764390)
chr4 (397-507)||(637886-638004)
chr4 (397-507)||(4168390-4168508)
chr4 (372-496)||(36621627-36621762)
chr4 (368-507)||(21097140-21097290)
chr4 (370-506)||(38485590-38485733)
chr4 (367-507)||(51837005-51837156)
chr4 (368-431)||(50643743-50643809)
chr4 (397-452)||(50563707-50563762)
chr4 (370-431)||(29826605-29826669)
chr4 (398-451)||(6386520-6386573)
chr4 (456-507)||(18923358-18923409)
chr4 (399-441)||(1729604-1729646)
chr4 (366-413)||(48077862-48077912)
[»] chr2 (9 HSPs)
chr2 (368-507)||(25192892-25193042)
chr2 (368-507)||(18298026-18298176)
chr2 (368-507)||(20709774-20709924)
chr2 (369-451)||(14551298-14551382)
chr2 (404-451)||(25995326-25995373)
chr2 (397-451)||(4579797-4579851)
chr2 (397-451)||(5098749-5098803)
chr2 (407-451)||(4281767-4281811)
chr2 (397-431)||(9143618-9143652)
[»] scaffold0097 (1 HSPs)
scaffold0097 (368-507)||(13613-13763)
[»] chr7 (14 HSPs)
chr7 (368-507)||(15974851-15975001)
chr7 (368-507)||(30428873-30429023)
chr7 (368-507)||(46024027-46024177)
chr7 (397-507)||(46573415-46573533)
chr7 (368-451)||(48690895-48690981)
chr7 (367-451)||(28396721-28396808)
chr7 (397-451)||(5757419-5757473)
chr7 (368-448)||(12279745-12279828)
chr7 (397-451)||(44141230-44141284)
chr7 (368-448)||(12279641-12279724)
chr7 (368-451)||(48305237-48305322)
chr7 (400-496)||(33797966-33798070)
chr7 (368-431)||(25778837-25778903)
chr7 (403-451)||(48691030-48691078)
[»] chr6 (11 HSPs)
chr6 (368-507)||(33346286-33346436)
chr6 (397-507)||(24737606-24737724)
chr6 (368-451)||(34399641-34399727)
chr6 (403-507)||(877246-877358)
chr6 (367-451)||(15034954-15035041)
chr6 (368-451)||(29157226-29157312)
chr6 (371-421)||(12394389-12394442)
chr6 (404-451)||(18611228-18611275)
chr6 (365-431)||(7089079-7089149)
chr6 (368-440)||(35119239-35119310)
chr6 (368-397)||(2759826-2759855)
[»] scaffold0194 (1 HSPs)
scaffold0194 (368-507)||(27607-27757)
[»] scaffold0544 (1 HSPs)
scaffold0544 (369-451)||(10654-10739)
[»] scaffold0337 (1 HSPs)
scaffold0337 (371-451)||(7020-7103)
[»] scaffold0189 (1 HSPs)
scaffold0189 (368-427)||(11193-11255)


Alignment Details
Target: chr8 (Bit Score: 380; Significance: 0; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 14 - 506
Target Start/End: Complemental strand, 15261272 - 15260767
Alignment:
Q  14 ataattctcagactccttatctcattaaa-taacaatacaaataaataaaaatgatgatcattgattcatttgggagatccaagagagaaaaaagagctg 112  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  15261272 ataattctcagactccttatctcattaaaataacaatacaaataaataaaaatgatgatcattgattcatttgggagatccaagagagaaaaaagagcta 15261173  T
Q  113 gcaatgggattgaagaaagtatggaagttgacaaaaacaatgaataaatatgcatatataactaattttcaaagattcagttaccactggaatttcatat 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  15261172 gcaatgggattgaagaaagtatggaagttgacaaaaacaatgaataaatatgcatatataactaattttcaaagattcagttacaactggaatttcatat 15261073  T
Q  213 cctcggacaaaatccttggtccttgtgtttctggctgataatttgaagacaaaaaacaatggtgaaagtcatgtatatgagaaagccagcgttgtctagg 312  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  15261072 cctcggacaaaatccttggtccttgtgtttctggctgagaatttgaagacaaaaaacaatggtgaaagtcatgtatatgagaaagccagcgttgtctaag 15260973  T
Q  313 gaaaataatgaagttgattaatgtttgatgccagaagacactccctcgtgtgagaggcaaaagttatggtgcataaggaaatcc----tgcaccgtgcat 408  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  | |    ||||||||||||    
T  15260972 gaaaataatgaagttgattaatgtttgatgccagaagacacttcctcgtgtgagaggcaaaagttatggtgcataaggattttccttatgcaccgtgcat 15260873  T
Q  409 aaacacttcacaatcatcagattaagtgtacacgtgtaataa--------ttttaaaactacaccagatcaaacttcatttgtttcaaacatttctctca 500  Q
    ||||||||||||| ||||| ||  ||||||||||| ||||||        || | ||||||||||| ||||||||||||||| |||||| ||||||||||    
T  15260872 aaacacttcacaaccatcaaatctagtgtacacgtttaataatccaaggcttctcaaactacaccaaatcaaacttcatttgcttcaaatatttctctca 15260773  T
Q  501 ctaaaa 506  Q
    ||||||    
T  15260772 ctaaaa 15260767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 368 - 507
Target Start/End: Complemental strand, 32987510 - 32987360
Alignment:
Q  368 ggcaaaagttatggtgcataaggaaatcct---gcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataa--------ttttaa 456  Q
    ||||||||||||||||||||||||||||||   |||||||||||||||||||||||| ||||||||  ||||||||||||||||||        || | |    
T  32987510 ggcaaaagttatggtgcataaggaaatccttatgcaccgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctca 32987411  T
Q  457 aactacaccagatcaaacttcatttgtttcaaacatttctctcactaaaac 507  Q
    |||||||||| ||||||||||||||| ||||||||||||||| ||||||||    
T  32987410 aactacaccaaatcaaacttcatttgcttcaaacatttctctaactaaaac 32987360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 368 - 507
Target Start/End: Original strand, 39021975 - 39022125
Alignment:
Q  368 ggcaaaagttatggtgcataaggaaatcct---gcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataa--------ttttaa 456  Q
    ||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||  |||||||| |||||||||        || | |    
T  39021975 ggcaaaagttatggtgcataaggaaatccttatgcaccgtgcataaacacttcacaatcatcagatctagtgtacatgtgtaataatcctaggcttctca 39022074  T
Q  457 aactacaccagatcaaacttcatttgtttcaaacatttctctcactaaaac 507  Q
    |||||||||| ||||||||||||||| ||||||||||| ||||||||||||    
T  39022075 aactacaccaaatcaaacttcatttgcttcaaacatttatctcactaaaac 39022125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 372 - 507
Target Start/End: Complemental strand, 4836762 - 4836616
Alignment:
Q  372 aaagttatggtgcataaggaaatcct---gcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataa--------ttttaaaact 460  Q
    ||||||||||||||||| ||||| ||   |||||||||||||||||||||||| ||||||||  ||||||||||||||||||        |||| |||||    
T  4836762 aaagttatggtgcataaagaaatgcttatgcaccgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaagcttttcaaact 4836663  T
Q  461 acaccagatcaaacttcatttgtttcaaacatttctctcactaaaac 507  Q
    |||||| ||||||||||||||| ||||||||||| ||||||||||||    
T  4836662 acaccaaatcaaacttcatttgcttcaaacatttatctcactaaaac 4836616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 372 - 507
Target Start/End: Complemental strand, 4842207 - 4842061
Alignment:
Q  372 aaagttatggtgcataaggaaatcct---gcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataa--------ttttaaaact 460  Q
    ||||||||||||||||| ||||| ||   |||||||||||||||||||||||| ||||||||  ||||||||||||||||||        |||| |||||    
T  4842207 aaagttatggtgcataaagaaatgcttatgcaccgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaagcttttcaaact 4842108  T
Q  461 acaccagatcaaacttcatttgtttcaaacatttctctcactaaaac 507  Q
    |||||| ||||||||||||||| ||||||||||| ||||||||||||    
T  4842107 acaccaaatcaaacttcatttgcttcaaacatttatctcactaaaac 4842061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 368 - 507
Target Start/End: Original strand, 7058114 - 7058264
Alignment:
Q  368 ggcaaaagttatggtgcataaggaaatcct---gcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataa--------ttttaa 456  Q
    ||||||||||||||||||||||||||| ||   |||||||||||||||||||||||| |||| |||  ||||||||||||||||||        || | |    
T  7058114 ggcaaaagttatggtgcataaggaaatacttatgcaccgtgcataaacacttcacaaccatccgatctagtgtacacgtgtaataatcctagacttctca 7058213  T
Q  457 aactacaccagatcaaacttcatttgtttcaaacatttctctcactaaaac 507  Q
    |||||||||| ||||||||||||||| |||||||| |||||||||||||||    
T  7058214 aactacaccaaatcaaacttcatttgcttcaaacacttctctcactaaaac 7058264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 397 - 507
Target Start/End: Original strand, 8550536 - 8550654
Alignment:
Q  397 tgcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataa--------ttttaaaactacaccagatcaaacttcatttgtttcaa 488  Q
    ||||||||||||||||||||||||| ||||||||  ||||||||||||||||||        || | ||| ||||||| ||||||||||||||| |||||    
T  8550536 tgcaccgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcataagcttctcaaattacaccaaatcaaacttcatttgcttcaa 8550635  T
Q  489 acatttctctcactaaaac 507  Q
    |||||||||||||||||||    
T  8550636 acatttctctcactaaaac 8550654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 368 - 451
Target Start/End: Original strand, 1208709 - 1208795
Alignment:
Q  368 ggcaaaagttatggtgcataaggaaatcct---gcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataat 451  Q
    ||||||||||||||||||||||||||||||   ||||||||||||||||||| |||| ||| ||||  |||||||||||||||||||    
T  1208709 ggcaaaagttatggtgcataaggaaatccttatgcaccgtgcataaacactttacaaccataagatctagtgtacacgtgtaataat 1208795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 368 - 431
Target Start/End: Original strand, 42433701 - 42433767
Alignment:
Q  368 ggcaaaagttatggtgcataaggaaatcc---tgcaccgtgcataaacacttcacaatcatcagatt 431  Q
    |||||||||||||||||||||||||||||   |||||||||||||| |||||||||| |||||||||    
T  42433701 ggcaaaagttatggtgcataaggaaatccttatgcaccgtgcataagcacttcacaaccatcagatt 42433767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 397 - 496
Target Start/End: Original strand, 7614100 - 7614207
Alignment:
Q  397 tgcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataa--------ttttaaaactacaccagatcaaacttcatttgtttcaa 488  Q
    |||||| |||||||||||||||||| ||||||||  | ||||||||||||||||        || | ||||||||||| ||||||||||||||| |||||    
T  7614100 tgcaccatgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcataggcttctcaaactacaccaaatcaaacttcatttgcttcaa 7614199  T
Q  489 acatttct 496  Q
    ||||||||    
T  7614200 acatttct 7614207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 397 - 451
Target Start/End: Original strand, 15181823 - 15181877
Alignment:
Q  397 tgcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataat 451  Q
    |||||| |||||||||||||||||| ||||||||  |||||||||||||||||||    
T  15181823 tgcaccctgcataaacacttcacaagcatcagatctagtgtacacgtgtaataat 15181877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 456 - 507
Target Start/End: Original strand, 2750124 - 2750175
Alignment:
Q  456 aaactacaccagatcaaacttcatttgtttcaaacatttctctcactaaaac 507  Q
    ||||||||||| ||||||||||||||  || |||||||||||||||||||||    
T  2750124 aaactacaccaaatcaaacttcatttactttaaacatttctctcactaaaac 2750175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 431
Target Start/End: Original strand, 41451099 - 41451172
Alignment:
Q  362 gtgagaggcaaaagttatggtgcataaggaaatcc----tgcaccgtgcataaacacttcacaatcatcagatt 431  Q
    |||| |||||||||||||||||||||||  | | |    |||||||||||||||||| ||||||||||||||||    
T  41451099 gtgataggcaaaagttatggtgcataagccatttccttatgcaccgtgcataaacacgtcacaatcatcagatt 41451172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 451
Target Start/End: Original strand, 1671850 - 1671889
Alignment:
Q  412 cacttcacaatcatcagattaagtgtacacgtgtaataat 451  Q
    |||||||||||||||||||| |||||| ||||||||||||    
T  1671850 cacttcacaatcatcagatttagtgtatacgtgtaataat 1671889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 368 - 507
Target Start/End: Complemental strand, 51362503 - 51362353
Alignment:
Q  368 ggcaaaagttatggtgcataaggaaatcct---gcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataa--------ttttaa 456  Q
    ||||||||||||||||||||||||||||||   |||||||||||||||||||||||| ||||||||| ||||||||||||||||||        || | |    
T  51362503 ggcaaaagttatggtgcataaggaaatccttatgcaccgtgcataaacacttcacaaccatcagatttagtgtacacgtgtaataatcctaggcttctca 51362404  T
Q  457 aactacaccagatcaaacttcatttgtttcaaacatttctctcactaaaac 507  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  51362403 aactacaccaaatcaaacttcatttgcttcaaacatttctctcactaaaac 51362353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 367 - 507
Target Start/End: Complemental strand, 19385381 - 19385230
Alignment:
Q  367 aggcaaaagttatggtgcataaggaaatcct---gcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataatttta-------- 455  Q
    |||||||||||||||||||||||||||||||   |||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||            
T  19385381 aggcaaaagttatggtgcataaggaaatccttatgcaccgtgcataaacacttcacaaccatcagatttagtgtacacgtgtaataattctaggcttctc 19385282  T
Q  456 aaactacaccagatcaaacttcatttgtttcaaacatttctctcactaaaac 507  Q
    |||||||| || ||||||||||||||| ||||| |||||| |||||||||||    
T  19385281 aaactacatcaaatcaaacttcatttgcttcaatcatttccctcactaaaac 19385230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 370 - 507
Target Start/End: Original strand, 50754008 - 50754156
Alignment:
Q  370 caaaagttatggtgcataaggaaatcct---gcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataa--------ttttaaaa 458  Q
    ||||||||||||| ||||||||||||||   |||||||||||||||||||||||| ||||||||  ||||||||||||||||||        || | |||    
T  50754008 caaaagttatggtacataaggaaatccttatgcaccgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaa 50754107  T
Q  459 ctacaccagatcaaacttcatttgtttcaaacatttctctcactaaaac 507  Q
    |||||||| ||||||||||||||| |||||||| |||||||||||||||    
T  50754108 ctacaccaaatcaaacttcatttgattcaaacacttctctcactaaaac 50754156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 368 - 507
Target Start/End: Original strand, 8718101 - 8718251
Alignment:
Q  368 ggcaaaagttatggtgcataaggaaatcc---tgcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataa--------ttttaa 456  Q
    |||||||||||||||||||||||||||||   |||||||| |||||| ||||||||| ||||||||  |||||||| |||||||||        || | |    
T  8718101 ggcaaaagttatggtgcataaggaaatccttatgcaccgtacataaatacttcacaaccatcagatctagtgtacatgtgtaataatcctaggcttctta 8718200  T
Q  457 aactacaccagatcaaacttcatttgtttcaaacatttctctcactaaaac 507  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  8718201 aactacaccaaatcaaacttcatttgtttaaaacatttctctcactaaaac 8718251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 368 - 507
Target Start/End: Original strand, 9069988 - 9070138
Alignment:
Q  368 ggcaaaagttatggtgcataaggaaatcc---tgcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataa--------ttttaa 456  Q
    |||||||||||||||||||||||||||||   |||||||| |||||| ||||||||| ||||||||  |||||||| |||||||||        || | |    
T  9069988 ggcaaaagttatggtgcataaggaaatccttatgcaccgtacataaatacttcacaaccatcagatctagtgtacatgtgtaataatcctaggcttctta 9070087  T
Q  457 aactacaccagatcaaacttcatttgtttcaaacatttctctcactaaaac 507  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  9070088 aactacaccaaatcaaacttcatttgtttaaaacatttctctcactaaaac 9070138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 381 - 507
Target Start/End: Complemental strand, 52987702 - 52987565
Alignment:
Q  381 gtgcataaggaaatcct---gcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataa--------ttttaaaactacaccagat 469  Q
    |||||||||||||||||   |||||||||||||||||||||||| ||||||||  ||||||||||||||||||        || | ||||||||||| ||    
T  52987702 gtgcataaggaaatccttatgcaccgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaat 52987603  T
Q  470 caaacttcatttgtttcaaacatttctctcactaaaac 507  Q
    ||||||||||||| |||||| |||||||||||||||||    
T  52987602 caaacttcatttgcttcaaatatttctctcactaaaac 52987565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 372 - 494
Target Start/End: Complemental strand, 16277475 - 16277342
Alignment:
Q  372 aaagttatggtgcataaggaaatcct---gcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataa--------ttttaaaact 460  Q
    |||||||||||||||||||||||| |   |||||||||||||||||||||||| ||||| ||  ||||||||||||||||||        || | |||||    
T  16277475 aaagttatggtgcataaggaaatctttatgcaccgtgcataaacacttcacaaccatcatatctagtgtacacgtgtaataatcctacgcttctcaaact 16277376  T
Q  461 acaccagatcaaacttcatttgtttcaaacattt 494  Q
    |||||| |||||||||||||||||||||||||||    
T  16277375 acaccaaatcaaacttcatttgtttcaaacattt 16277342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 368 - 507
Target Start/End: Complemental strand, 7045365 - 7045216
Alignment:
Q  368 ggcaaaagttatggtgcataaggaaatcct---gcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataa--------ttttaa 456  Q
    ||||||||||||||||||||||||||| ||   |||||||| ||||||||||||||| ||||||||  ||||||||||||||||||        || | |    
T  7045365 ggcaaaagttatggtgcataaggaaattcttatgcaccgtgtataaacacttcacaaccatcagatctagtgtacacgtgtaataatcgtaggcttctca 7045266  T
Q  457 aactacaccagatcaaacttcatttgtttcaaacatttctctcactaaaac 507  Q
     |||||| || ||||||||| ||||| ||||||||||||||||||||||||    
T  7045265 gactacatcaaatcaaactt-atttgcttcaaacatttctctcactaaaac 7045216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 397 - 507
Target Start/End: Original strand, 39099229 - 39099347
Alignment:
Q  397 tgcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataatttta--------aaactacaccagatcaaacttcatttgtttcaa 488  Q
    ||||||||||||||| | ||||||| ||||||||  |||||||||||||||||||  ||        ||||||||| | |||||||||||||||||| ||    
T  39099229 tgcaccgtgcataaatatttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacactaaatcaaacttcatttgtttaaa 39099328  T
Q  489 acatttctctcactaaaac 507  Q
    |||||||||||||||||||    
T  39099329 acatttctctcactaaaac 39099347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 403 - 452
Target Start/End: Complemental strand, 17627258 - 17627209
Alignment:
Q  403 gtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataatt 452  Q
    ||||||||||||||||||| ||||||||  ||||||||||||||||||||    
T  17627258 gtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatt 17627209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 391
Target Start/End: Complemental strand, 1377847 - 1377819
Alignment:
Q  363 tgagaggcaaaagttatggtgcataagga 391  Q
    |||||||||||||||||||||||||||||    
T  1377847 tgagaggcaaaagttatggtgcataagga 1377819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 399 - 451
Target Start/End: Original strand, 23699362 - 23699414
Alignment:
Q  399 caccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataat 451  Q
    |||| |||||||||||||||||| ||||| ||  | |||||||||||||||||    
T  23699362 caccctgcataaacacttcacaaccatcatatctaatgtacacgtgtaataat 23699414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 399 - 451
Target Start/End: Original strand, 23717817 - 23717869
Alignment:
Q  399 caccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataat 451  Q
    |||| |||||||||||||||||| ||||| ||  | |||||||||||||||||    
T  23717817 caccctgcataaacacttcacaaccatcatatctaatgtacacgtgtaataat 23717869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 399 - 451
Target Start/End: Original strand, 23736273 - 23736325
Alignment:
Q  399 caccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataat 451  Q
    |||| |||||||||||||||||| ||||| ||  | |||||||||||||||||    
T  23736273 caccctgcataaacacttcacaaccatcatatctaatgtacacgtgtaataat 23736325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 368 - 506
Target Start/End: Complemental strand, 25297 - 25148
Alignment:
Q  368 ggcaaaagttatggtgcataaggaaatcct---gcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataatttta--------a 456  Q
    ||||||||||||||||||||||||||||||   |||||||||||||||||||||||| ||||||||| ||||||||||||| ||||| |||        |    
T  25297 ggcaaaagttatggtgcataaggaaatccttatgcaccgtgcataaacacttcacaaccatcagatttagtgtacacgtgtcataatcttaggtttctca 25198  T
Q  457 aactacaccagatcaaacttcatttgtttcaaacatttctctcactaaaa 506  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  25197 aactacaccaaatcaaacttcatttgcttcaaacatttctctcactaaaa 25148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 3e-37; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 368 - 507
Target Start/End: Original strand, 18056784 - 18056934
Alignment:
Q  368 ggcaaaagttatggtgcataaggaaatcct---gcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataa--------ttttaa 456  Q
    ||||||||||||||||||||||||||||||   |||||||||||||||||||||||| ||||||||  ||||||||||||||||||        || | |    
T  18056784 ggcaaaagttatggtgcataaggaaatccttatgcaccgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctca 18056883  T
Q  457 aactacaccagatcaaacttcatttgtttcaaacatttctctcactaaaac 507  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  18056884 aactacaccaaatcaaacttcatttgcttcaaacatttctctcactaaaac 18056934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 368 - 507
Target Start/End: Original strand, 22348039 - 22348189
Alignment:
Q  368 ggcaaaagttatggtgcataaggaaatcct---gcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataa--------ttttaa 456  Q
    ||||||||||||||||||||||||||||||   |||||| ||||||||||||||||| ||||| ||  ||||||||||||||||||        || | |    
T  22348039 ggcaaaagttatggtgcataaggaaatccttatgcaccgcgcataaacacttcacaaccatcatatctagtgtacacgtgtaataatcctaggcttctca 22348138  T
Q  457 aactacaccagatcaaacttcatttgtttcaaacatttctctcactaaaac 507  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  22348139 aactacaccaaatcaaacttcatttgcttcaaacatttctctcactaaaac 22348189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 403 - 507
Target Start/End: Original strand, 179646 - 179758
Alignment:
Q  403 gtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataat--------tttaaaactacaccagatcaaacttcatttgtttcaaacattt 494  Q
    ||||||||||||||||||| ||||||||  |||||||||||||||||||        | | ||||||||||| ||||||||||||||| || ||||||||    
T  179646 gtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcccaagcttctcaaactacaccaaatcaaacttcatttgcttaaaacattt 179745  T
Q  495 ctctcactaaaac 507  Q
    |||||||||||||    
T  179746 ctctcactaaaac 179758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 404 - 507
Target Start/End: Complemental strand, 23320111 - 23320000
Alignment:
Q  404 tgcataaacacttcacaatcatcagattaagtgtacacgtgtaataatttta--------aaactacaccagatcaaacttcatttgtttcaaacatttc 495  Q
    |||||||||||||||||| ||||||||  |||||||||||||||||||  ||        ||||||||||| ||||||||||||||| || |||||||||    
T  23320111 tgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctagacttctcaaactacaccaaatcaaacttcatttgctttaaacatttc 23320012  T
Q  496 tctcactaaaac 507  Q
    ||||||||||||    
T  23320011 tctcactaaaac 23320000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 366 - 507
Target Start/End: Original strand, 45889594 - 45889746
Alignment:
Q  366 gaggcaaaagttatggtgcataaggaaatcctg---caccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataatttta------- 455  Q
    |||||||||| |||||||||||||||||| ||    ||||||||||||||| || |||| ||||||||  ||| |||| |||||||||| |||           
T  45889594 gaggcaaaaggtatggtgcataaggaaattcttatccaccgtgcataaacattttacaaccatcagatctagtatacatgtgtaataatcttaggcttct 45889693  T
Q  456 -aaactacaccagatcaaacttcatttgtttcaaacatttctctcactaaaac 507  Q
     ||||||||||| |||||| |||||||  ||||||||||||||||||||||||    
T  45889694 caaactacaccaaatcaaatttcatttccttcaaacatttctctcactaaaac 45889746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 368 - 451
Target Start/End: Original strand, 16115851 - 16115937
Alignment:
Q  368 ggcaaaagttatggtgcataaggaaatcct---gcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataat 451  Q
    ||||||||||||  ||||||||||||||||   |||||||||||||||||||||||| ||||| ||  | |||||||||||||||||    
T  16115851 ggcaaaagttatcatgcataaggaaatccttatgcaccgtgcataaacacttcacaaccatcaaatctaatgtacacgtgtaataat 16115937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 397 - 452
Target Start/End: Original strand, 37639374 - 37639429
Alignment:
Q  397 tgcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataatt 452  Q
    |||||| |||||||||||||||||| ||||||||  ||||||||||||||||||||    
T  37639374 tgcaccctgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatt 37639429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 404 - 507
Target Start/End: Complemental strand, 8402337 - 8402226
Alignment:
Q  404 tgcataaacacttcacaatcatcagattaagtgtacacgtgtaataatttta--------aaactacaccagatcaaacttcatttgtttcaaacatttc 495  Q
    ||||||||||||||| || ||||||||  ||||||||| |||||||||  ||        |||||| |||| |||||||||||| || ||||||||||||    
T  8402337 tgcataaacacttcataaccatcagatctagtgtacacatgtaataatcctaggtttctcaaactaaaccaaatcaaacttcatctgcttcaaacatttc 8402238  T
Q  496 tctcactaaaac 507  Q
    ||||||||||||    
T  8402237 tctcactaaaac 8402226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 406 - 496
Target Start/End: Original strand, 30802437 - 30802535
Alignment:
Q  406 cataaacacttcacaatcatcagattaagtgtacacgtgtaataatttta--------aaactacaccagatcaaacttcatttgtttcaaacatttct 496  Q
    |||||||| ||||||| ||||||||  ||||||||||||||||||| |||        ||||||||||| ||||||||||||||| |||||| ||||||    
T  30802437 cataaacatttcacaaccatcagatctagtgtacacgtgtaataatcttaggcttctcaaactacaccaaatcaaacttcatttgcttcaaatatttct 30802535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 451
Target Start/End: Complemental strand, 35198214 - 35198160
Alignment:
Q  397 tgcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataat 451  Q
    |||||| |||||||||||||||||  ||||||||  |||||||||||||||||||    
T  35198214 tgcaccctgcataaacacttcacagccatcagatctagtgtacacgtgtaataat 35198160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 431
Target Start/End: Complemental strand, 23921963 - 23921897
Alignment:
Q  368 ggcaaaagttatggtgcataaggaaatcc---tgcaccgtgcataaacacttcacaatcatcagatt 431  Q
    |||||||||||| ||||||||||||||||   |||| ||||||||| ||||||| || |||||||||    
T  23921963 ggcaaaagttattgtgcataaggaaatccttatgcatcgtgcataagcacttcataaccatcagatt 23921897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 397 - 431
Target Start/End: Original strand, 11421627 - 11421661
Alignment:
Q  397 tgcaccgtgcataaacacttcacaatcatcagatt 431  Q
    ||||||||||||||||||||||||| |||||||||    
T  11421627 tgcaccgtgcataaacacttcacaaccatcagatt 11421661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 397 - 431
Target Start/End: Original strand, 34369693 - 34369727
Alignment:
Q  397 tgcaccgtgcataaacacttcacaatcatcagatt 431  Q
    ||||||||||||||||||||||||| |||||||||    
T  34369693 tgcaccgtgcataaacacttcacaaccatcagatt 34369727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 397
Target Start/End: Complemental strand, 23320158 - 23320129
Alignment:
Q  368 ggcaaaagttatggtgcataaggaaatcct 397  Q
    ||||||||||||||||||||||||||||||    
T  23320158 ggcaaaagttatggtgcataaggaaatcct 23320129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 365 - 507
Target Start/End: Complemental strand, 28070221 - 28070068
Alignment:
Q  365 agaggcaaaagttatggtgcataaggaaatcct---gcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataa--------ttt 453  Q
    |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||  |||||||  ||||||||||||||||||        ||     
T  28070221 agaggcaaaagttatggtgcataaggaaatccttatgcaccgtgcataaacacttcacaactatcagatctagtgtacacgtgtaataatcctagacttc 28070122  T
Q  454 taaaactacaccagatcaaacttcatttgtttcaaacatttctctcactaaaac 507  Q
    | ||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  28070121 tcaaactacaccaaatcaaacttcatttgcttcaaacatttctctcactaaaac 28070068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 370 - 507
Target Start/End: Original strand, 13362772 - 13362920
Alignment:
Q  370 caaaagttatggtgcataaggaaatcct---gcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataa--------ttttaaaa 458  Q
    ||||||||||||||||||||||||||||   |||||||||||||||||||||||| ||||||||  |||||| |||||||||||        || | |||    
T  13362772 caaaagttatggtgcataaggaaatccttatgcaccgtgcataaacacttcacaaccatcagatctagtgtatacgtgtaataatcataggcttctcaaa 13362871  T
Q  459 ctacaccagatcaaacttcatttgtttcaaacatttctctcactaaaac 507  Q
    |||||||| |||||| |||||||| ||||||||||||||||||||||||    
T  13362872 ctacaccaaatcaaaattcatttgcttcaaacatttctctcactaaaac 13362920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 368 - 506
Target Start/End: Complemental strand, 23335772 - 23335623
Alignment:
Q  368 ggcaaaagttatggtgcataaggaaatcc---tgcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataa--------ttttaa 456  Q
    |||||||||||||||||||||||||||||   ||||||||||||||||| ||||||| ||||||||  ||||||||||||||||||        || | |    
T  23335772 ggcaaaagttatggtgcataaggaaatccgtatgcaccgtgcataaacatttcacaaccatcagatctagtgtacacgtgtaataatcataggcttctca 23335673  T
Q  457 aactacaccagatcaaacttcatttgtttcaaacatttctctcactaaaa 506  Q
    |||||||||| |||||| ||||||||  ||||||||||||||||||||||    
T  23335672 aactacaccaaatcaaagttcatttgcatcaaacatttctctcactaaaa 23335623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 370 - 507
Target Start/End: Complemental strand, 25017280 - 25017147
Alignment:
Q  370 caaaagttatggtgcataaggaaatcct---gcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataattttaaaactacacca 466  Q
    ||||||||||||||||||||||||||||   |||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||    |          
T  25017280 caaaagttatggtgcataaggaaatccttatgcaccgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataattttaggttt------ 25017187  T
Q  467 gatcaaacttcatttgtttcaaacatttctctcactaaaac 507  Q
      |||||||||||||| ||||||||||||||||||||||||    
T  25017186 -ctcaaacttcatttgcttcaaacatttctctcactaaaac 25017147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 366 - 451
Target Start/End: Original strand, 34329125 - 34329213
Alignment:
Q  366 gaggcaaaagttatggtgcataaggaaatcct---gcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataat 451  Q
    |||||||||||||||||||||||||||||| |   |||||||||||||||||||||||| ||||||||  ||||||||||  |||||||    
T  34329125 gaggcaaaagttatggtgcataaggaaatctttatgcaccgtgcataaacacttcacaaccatcagatctagtgtacacgaataataat 34329213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 399 - 507
Target Start/End: Complemental strand, 2827098 - 2826982
Alignment:
Q  399 caccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataatttta--------aaactacaccagatcaaacttcatttgtttcaaac 490  Q
    |||||||||||||||||| |||| ||||||||  |||||||||||||||| || |||        ||||||||||| |||||| |||||||| |||||||    
T  2827098 caccgtgcataaacactttacaaccatcagatctagtgtacacgtgtaattatcttaggcttctcaaactacaccaaatcaaatttcatttgcttcaaac 2826999  T
Q  491 atttctctcactaaaac 507  Q
    |||| ||||||||||||    
T  2826998 atttatctcactaaaac 2826982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 456 - 507
Target Start/End: Original strand, 42512273 - 42512324
Alignment:
Q  456 aaactacaccagatcaaacttcatttgtttcaaacatttctctcactaaaac 507  Q
    ||||||||||| ||||||||||||||  ||||||||||||||||||||||||    
T  42512273 aaactacaccaaatcaaacttcatttacttcaaacatttctctcactaaaac 42512324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 397 - 451
Target Start/End: Complemental strand, 16668827 - 16668773
Alignment:
Q  397 tgcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataat 451  Q
    |||||| |||||||||||||||||| ||||||||  |||||||||||||||||||    
T  16668827 tgcaccctgcataaacacttcacaaccatcagatctagtgtacacgtgtaataat 16668773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 404 - 451
Target Start/End: Complemental strand, 18465582 - 18465535
Alignment:
Q  404 tgcataaacacttcacaatcatcagattaagtgtacacgtgtaataat 451  Q
    |||||||||||||||||| ||||||||  |||||||||||||||||||    
T  18465582 tgcataaacacttcacaaccatcagatctagtgtacacgtgtaataat 18465535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 6e-35; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 368 - 507
Target Start/End: Original strand, 45255975 - 45256125
Alignment:
Q  368 ggcaaaagttatggtgcataaggaaatcct---gcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataa--------ttttaa 456  Q
    ||||||||||||||||||||||||||||||   ||||||||||||||||||||||||  |||||||  ||||||||||||||||||        |||| |    
T  45255975 ggcaaaagttatggtgcataaggaaatccttatgcaccgtgcataaacacttcacaactatcagatatagtgtacacgtgtaataatcctaggcttttca 45256074  T
Q  457 aactacaccagatcaaacttcatttgtttcaaacatttctctcactaaaac 507  Q
    ||||||| || ||||||||||||||| ||||||||||||||||||||||||    
T  45256075 aactacatcaaatcaaacttcatttgcttcaaacatttctctcactaaaac 45256125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 371 - 507
Target Start/End: Complemental strand, 22181307 - 22181160
Alignment:
Q  371 aaaagttatggtgcataaggaaatcct---gcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataa--------ttttaaaac 459  Q
    |||||||||||||||||||||||||||   |||||||||||||| ||||||||| ||||||||| ||||||||||||||||||        || | ||||    
T  22181307 aaaagttatggtgcataaggaaatccttatgcaccgtgcataaaaacttcacaaccatcagatttagtgtacacgtgtaataatcctaggtttctcaaac 22181208  T
Q  460 tacaccagatcaaacttcatttgtttcaaacatttctctcactaaaac 507  Q
    ||||||| |||||||||||||||  |||||||||||||||||||||||    
T  22181207 tacaccaaatcaaacttcatttgcctcaaacatttctctcactaaaac 22181160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 367 - 507
Target Start/End: Complemental strand, 26447478 - 26447327
Alignment:
Q  367 aggcaaaagttatggtgcataaggaaatcct---gcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataatttta-------- 455  Q
    |||||||||| ||||||||||||||||||||   |||||||||||||||||||||||| ||||||||  |||||||||||||||||||| ||            
T  26447478 aggcaaaagtaatggtgcataaggaaatccttatgcaccgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataattctaggcttcac 26447379  T
Q  456 aaactacaccagatcaaacttcatttgtttcaaacatttctctcactaaaac 507  Q
    ||| ||||||| |||||| |||||||| ||||||||||||||||||||||||    
T  26447378 aaattacaccaaatcaaatttcatttgcttcaaacatttctctcactaaaac 26447327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 368 - 507
Target Start/End: Original strand, 27764240 - 27764390
Alignment:
Q  368 ggcaaaagttatggtgcataaggaaatcct---gcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataa--------ttttaa 456  Q
    ||||||||||||||||||||||||||||||   |||||||||||||||||||| ||| ||||||||  ||||||||||||||||||        || | |    
T  27764240 ggcaaaagttatggtgcataaggaaatccttatgcaccgtgcataaacacttcgcaaccatcagatctagtgtacacgtgtaataatcctacgcttctca 27764339  T
Q  457 aactacaccagatcaaacttcatttgtttcaaacatttctctcactaaaac 507  Q
    |||||||||| ||||||| | ||||| ||||||||||||||||||||||||    
T  27764340 aactacaccaaatcaaaccttatttgcttcaaacatttctctcactaaaac 27764390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 397 - 507
Target Start/End: Original strand, 637886 - 638004
Alignment:
Q  397 tgcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataatttta--------aaactacaccagatcaaacttcatttgtttcaa 488  Q
    ||||||||||||||||||||||||| ||||||||  |||||||| ||||||||||||||        ||||||||||| ||||||||||||||| |||||    
T  637886 tgcaccgtgcataaacacttcacaaccatcagatctagtgtacatgtgtaataattttaggcttctcaaactacaccaaatcaaacttcatttgcttcaa 637985  T
Q  489 acatttctctcactaaaac 507  Q
    |||||||||||||||||||    
T  637986 acatttctctcactaaaac 638004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 397 - 507
Target Start/End: Original strand, 4168390 - 4168508
Alignment:
Q  397 tgcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataatttta--------aaactacaccagatcaaacttcatttgtttcaa 488  Q
    ||||||||||||||||||||||||| ||||||||  ||||||||| |||||||||  ||        ||||||||||| |||||||||||||||||||||    
T  4168390 tgcaccgtgcataaacacttcacaaccatcagatctagtgtacacatgtaataatcctaggtttctcaaactacaccaaatcaaacttcatttgtttcaa 4168489  T
Q  489 acatttctctcactaaaac 507  Q
    |||||||||||||||||||    
T  4168490 acatttctctcactaaaac 4168508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 372 - 496
Target Start/End: Complemental strand, 36621762 - 36621627
Alignment:
Q  372 aaagttatggtgcataaggaaatcct---gcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataa--------ttttaaaact 460  Q
    ||||||||||||||||||||||||||   |||||||||||||||||||||||| ||||||||  | ||||||||||||||||        || | |||||    
T  36621762 aaagttatggtgcataaggaaatccttatgcaccgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctatgcttcttaaact 36621663  T
Q  461 acaccagatcaaacttcatttgtttcaaacatttct 496  Q
    |||||| ||||||||||||||| |||||||||||||    
T  36621662 acaccaaatcaaacttcatttgcttcaaacatttct 36621627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 368 - 507
Target Start/End: Original strand, 21097140 - 21097290
Alignment:
Q  368 ggcaaaagttatggtgcataaggaaatcct---gcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataatttta--------a 456  Q
    |||||||||||  |||||||||||||||||   |||||||| ||||||||||||||| ||| ||||  ||| |||||||||||||||| ||        |    
T  21097140 ggcaaaagttaccgtgcataaggaaatccttatgcaccgtgtataaacacttcacaaccattagatctagtttacacgtgtaataattctaagcttatta 21097239  T
Q  457 aactacaccagatcaaacttcatttgtttcaaacatttctctcactaaaac 507  Q
    || ||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  21097240 aattacaccaaatcaaacttcatttgcttcaaacatttctctcactaaaac 21097290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 370 - 506
Target Start/End: Complemental strand, 38485733 - 38485590
Alignment:
Q  370 caaaagttatggtgcataaggaaatcctgcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataa--------ttttaaaacta 461  Q
    ||||||||||||||||||||||| |  |||||||||||||||| |||||||| ||||||||  | ||||||||||||||||        || | ||| ||    
T  38485733 caaaagttatggtgcataaggaatta-tgcaccgtgcataaacgcttcacaaccatcagatctaatgtacacgtgtaataatcctaggcttctcaaaata 38485635  T
Q  462 caccagatcaaacttcatttgtttcaaacatttctctcactaaaa 506  Q
    ||  | ||||||||||||||| |||||||||||||||||||||||    
T  38485634 cattaaatcaaacttcatttgcttcaaacatttctctcactaaaa 38485590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 367 - 507
Target Start/End: Complemental strand, 51837156 - 51837005
Alignment:
Q  367 aggcaaaagttatggtgcataaggaaatcctg--caccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataa--------ttttaa 456  Q
    ||||||||||||||||| ||||| |||||||   || || ||||||| ||||||||| ||||||||| | ||||||||||||||||        || | |    
T  51837156 aggcaaaagttatggtgtataagaaaatccttatcatcgagcataaatacttcacaaccatcagatttaatgtacacgtgtaataatcctaggcttctca 51837057  T
Q  457 aactacaccagatcaaacttca-tttgtttcaaacatttctctcactaaaac 507  Q
    |||||||||| ||||||||||| |||  ||||||||||||||||||||||||    
T  51837056 aactacaccaaatcaaacttcattttacttcaaacatttctctcactaaaac 51837005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 368 - 431
Target Start/End: Original strand, 50643743 - 50643809
Alignment:
Q  368 ggcaaaagttatggtgcataaggaaatcc---tgcaccgtgcataaacacttcacaatcatcagatt 431  Q
    |||||||||||||||||||||||||||||   |||||||||||||||||||||| || |||||||||    
T  50643743 ggcaaaagttatggtgcataaggaaatccttatgcaccgtgcataaacacttcataaccatcagatt 50643809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 397 - 452
Target Start/End: Complemental strand, 50563762 - 50563707
Alignment:
Q  397 tgcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataatt 452  Q
    |||||| |||||||||||||||||| ||||||||  ||||||||||||||||||||    
T  50563762 tgcaccctgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatt 50563707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 370 - 431
Target Start/End: Complemental strand, 29826669 - 29826605
Alignment:
Q  370 caaaagttatggtgcataaggaaatcct---gcaccgtgcataaacacttcacaatcatcagatt 431  Q
    ||||||||||||| ||||||||||||||   ||||||||||||| |||||||||| |||||||||    
T  29826669 caaaagttatggtacataaggaaatccttatgcaccgtgcataagcacttcacaaccatcagatt 29826605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 398 - 451
Target Start/End: Complemental strand, 6386573 - 6386520
Alignment:
Q  398 gcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataat 451  Q
    ||||| |||||||||||||||||| ||||||||| |||| ||||||||||||||    
T  6386573 gcaccctgcataaacacttcacaaccatcagatttagtggacacgtgtaataat 6386520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 456 - 507
Target Start/End: Original strand, 18923358 - 18923409
Alignment:
Q  456 aaactacaccagatcaaacttcatttgtttcaaacatttctctcactaaaac 507  Q
    ||||||||||| ||||||||||||||| |||||| |||||| ||||||||||    
T  18923358 aaactacaccaaatcaaacttcatttgcttcaaatatttctgtcactaaaac 18923409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 399 - 441
Target Start/End: Complemental strand, 1729646 - 1729604
Alignment:
Q  399 caccgtgcataaacacttcacaatcatcagattaagtgtacac 441  Q
    ||||||||||||||||||||||| ||||||||  |||||||||    
T  1729646 caccgtgcataaacacttcacaaccatcagatctagtgtacac 1729604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 413
Target Start/End: Complemental strand, 48077912 - 48077862
Alignment:
Q  366 gaggcaaaagttatggtgcataaggaaatcc---tgcaccgtgcataaaca 413  Q
    ||||||||||||||  |||||||||||||||   |||||||||||||||||    
T  48077912 gaggcaaaagttatcatgcataaggaaatccttatgcaccgtgcataaaca 48077862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 6e-35; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 368 - 507
Target Start/End: Original strand, 25192892 - 25193042
Alignment:
Q  368 ggcaaaagttatggtgcataaggaaatcct---gcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataatttta--------a 456  Q
    ||||||||||||||||||||||||||||||   |||||||||||||||||||||||| ||| ||||  |||||||||||||||||||| ||        |    
T  25192892 ggcaaaagttatggtgcataaggaaatccttatgcaccgtgcataaacacttcacaaccattagatctagtgtacacgtgtaataattctaggcttctca 25192991  T
Q  457 aactacaccagatcaaacttcatttgtttcaaacatttctctcactaaaac 507  Q
    || ||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  25192992 aattacaccaaatcaaacttcatttgcttcaaacatttctctcactaaaac 25193042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 368 - 507
Target Start/End: Complemental strand, 18298176 - 18298026
Alignment:
Q  368 ggcaaaagttatggtgcataaggaaatcct---gcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataa--------ttttaa 456  Q
    ||||||||||||||||||||||||||||||   |||||||||||||||||||||||| ||||||||  ||||||||||||||||||        || | |    
T  18298176 ggcaaaagttatggtgcataaggaaatccttatgcaccgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctca 18298077  T
Q  457 aactacaccagatcaaacttcatttgtttcaaacatttctctcactaaaac 507  Q
    |||||||||| ||||||||||||||| ||||| | ||||||||||||||||    
T  18298076 aactacaccaaatcaaacttcatttgcttcaagcgtttctctcactaaaac 18298026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 368 - 507
Target Start/End: Original strand, 20709774 - 20709924
Alignment:
Q  368 ggcaaaagttatggtgcataaggaaatcctg---caccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataa--------ttttaa 456  Q
    ||||||||||||||||||||||||||||||    ||||||||||||||||||||||| ||||||||  ||||||||| ||||||||        || | |    
T  20709774 ggcaaaagttatggtgcataaggaaatccttatccaccgtgcataaacacttcacaaccatcagatctagtgtacacatgtaataatcctacgcttctca 20709873  T
Q  457 aactacaccagatcaaacttcatttgtttcaaacatttctctcactaaaac 507  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  20709874 aactacaccaaatcaaacttcatttgcttcaaacatttctctcactaaaac 20709924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 369 - 451
Target Start/End: Complemental strand, 14551382 - 14551298
Alignment:
Q  369 gcaaaagttatggtgcataaggaaatcc---tgcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataat 451  Q
    |||||||||||||||||||||||||| |   |||| |||||||||||||||||||| ||||||||  |||||||| ||||||||||    
T  14551382 gcaaaagttatggtgcataaggaaattcttatgca-cgtgcataaacacttcacaaccatcagatctagtgtacatgtgtaataat 14551298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 404 - 451
Target Start/End: Original strand, 25995326 - 25995373
Alignment:
Q  404 tgcataaacacttcacaatcatcagattaagtgtacacgtgtaataat 451  Q
    |||||||| ||||||||| ||||||||| |||||||||||||||||||    
T  25995326 tgcataaatacttcacaaccatcagatttagtgtacacgtgtaataat 25995373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 451
Target Start/End: Complemental strand, 4579851 - 4579797
Alignment:
Q  397 tgcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataat 451  Q
    |||||| ||||||||||||| |||| ||||||||  |||||||||||||||||||    
T  4579851 tgcaccatgcataaacactttacaaccatcagatctagtgtacacgtgtaataat 4579797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 451
Target Start/End: Original strand, 5098749 - 5098803
Alignment:
Q  397 tgcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataat 451  Q
    |||||| |||||||||||||||||| ||||| ||| | |||||||||||||||||    
T  5098749 tgcaccctgcataaacacttcacaaccatcaaatttattgtacacgtgtaataat 5098803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 407 - 451
Target Start/End: Complemental strand, 4281811 - 4281767
Alignment:
Q  407 ataaacacttcacaatcatcagattaagtgtacacgtgtaataat 451  Q
    ||||||||||||||| ||||||||  |||||||||||||||||||    
T  4281811 ataaacacttcacaaccatcagatctagtgtacacgtgtaataat 4281767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 397 - 431
Target Start/End: Original strand, 9143618 - 9143652
Alignment:
Q  397 tgcaccgtgcataaacacttcacaatcatcagatt 431  Q
    |||||||||||||||||| ||||||||||||||||    
T  9143618 tgcaccgtgcataaacacatcacaatcatcagatt 9143652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 368 - 507
Target Start/End: Original strand, 13613 - 13763
Alignment:
Q  368 ggcaaaagttatggtgcataaggaaatcctg---caccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataa--------ttttaa 456  Q
    ||||||||||||||||||||||||||||||    ||||||||||||||||||||||| ||||||||  ||||||||| ||||||||        || | |    
T  13613 ggcaaaagttatggtgcataaggaaatccttatccaccgtgcataaacacttcacaaccatcagatctagtgtacacatgtaataatcctacgcttctca 13712  T
Q  457 aactacaccagatcaaacttcatttgtttcaaacatttctctcactaaaac 507  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  13713 aactacaccaaatcaaacttcatttgcttcaaacatttctctcactaaaac 13763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 368 - 507
Target Start/End: Complemental strand, 15975001 - 15974851
Alignment:
Q  368 ggcaaaagttatggtgcataaggaaatcct---gcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataatttta--------a 456  Q
    ||||||||||||||||||||||||||||||   |||||||||||||||||||||||| ||||| ||| ||||||||| ||||||||| |||        |    
T  15975001 ggcaaaagttatggtgcataaggaaatccttatgcaccgtgcataaacacttcacaaccatcatatttagtgtacacatgtaataatcttaggcttatca 15974902  T
Q  457 aactacaccagatcaaacttcatttgtttcaaacatttctctcactaaaac 507  Q
    || ||||||| |||||||||||| || ||||||||||||||||||||||||    
T  15974901 aagtacaccaaatcaaacttcatctgcttcaaacatttctctcactaaaac 15974851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 368 - 507
Target Start/End: Original strand, 30428873 - 30429023
Alignment:
Q  368 ggcaaaagttatggtgcataaggaaatcct---gcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataa--------ttttaa 456  Q
    ||||||||||||||||||||||||||||||   |||||||||||||||| ||||||| ||||||||  ||||||||||||||||||        || | |    
T  30428873 ggcaaaagttatggtgcataaggaaatccttatgcaccgtgcataaacatttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctca 30428972  T
Q  457 aactacaccagatcaaacttcatttgtttcaaacatttctctcactaaaac 507  Q
    |||||||||| ||||||||||||||| ||||||||||| ||||||||||||    
T  30428973 aactacaccaaatcaaacttcatttgcttcaaacatttatctcactaaaac 30429023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 368 - 507
Target Start/End: Original strand, 46024027 - 46024177
Alignment:
Q  368 ggcaaaagttatggtgcataaggaaatcct---gcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataa--------ttttaa 456  Q
    |||||||||||||||||| ||| |||||||   |||||||||||||||||||||||| ||||||||  ||||||||||||||||||        || | |    
T  46024027 ggcaaaagttatggtgcacaagaaaatccttatgcaccgtgcataaacacttcacaaccatcagatatagtgtacacgtgtaataatcctagacttctca 46024126  T
Q  457 aactacaccagatcaaacttcatttgtttcaaacatttctctcactaaaac 507  Q
    |||||||  | ||||||||||||||| |||||| |||||||||||||||||    
T  46024127 aactacattaaatcaaacttcatttgcttcaaatatttctctcactaaaac 46024177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 397 - 507
Target Start/End: Complemental strand, 46573533 - 46573415
Alignment:
Q  397 tgcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataatttta--------aaactacaccagatcaaacttcatttgtttcaa 488  Q
    ||||||||  ||||||||||||||| ||||||||  |||||||||||||||||||  ||        ||||||||||| ||||||||||||||| |||||    
T  46573533 tgcaccgtatataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcatttgcttcaa 46573434  T
Q  489 acatttctctcactaaaac 507  Q
    |||||||||||||||||||    
T  46573433 acatttctctcactaaaac 46573415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 368 - 451
Target Start/End: Original strand, 48690895 - 48690981
Alignment:
Q  368 ggcaaaagttatggtgcataaggaaatcct---gcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataat 451  Q
    ||||||||||||||||||||| ||||||||   |||||||||||||||| ||||||| ||||| ||  |||||||||||||||||||    
T  48690895 ggcaaaagttatggtgcataaagaaatccttatgcaccgtgcataaacagttcacaaccatcaaatctagtgtacacgtgtaataat 48690981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 367 - 451
Target Start/End: Original strand, 28396721 - 28396808
Alignment:
Q  367 aggcaaaagttatggtgcataaggaaatcct---gcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataat 451  Q
    |||||||||||| | ||||||||||||||||   |||||||||||||||| ||||||||||||||||  |||||||| | ||||||||    
T  28396721 aggcaaaagttacgatgcataaggaaatccttatgcaccgtgcataaacatttcacaatcatcagatctagtgtacaagagtaataat 28396808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 397 - 451
Target Start/End: Original strand, 5757419 - 5757473
Alignment:
Q  397 tgcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataat 451  Q
    ||||||||||||||||||||||||| ||||||||  |||||||||||||||||||    
T  5757419 tgcaccgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataat 5757473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 368 - 448
Target Start/End: Original strand, 12279745 - 12279828
Alignment:
Q  368 ggcaaaagttatggtgcataaggaaatc---ctgcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaat 448  Q
    ||||||||||||||||||||||||||||    ||||||||||||||| ||||||||| ||| ||||  |||||| |||||||||    
T  12279745 ggcaaaagttatggtgcataaggaaatctttatgcaccgtgcataaagacttcacaaccattagatctagtgtatacgtgtaat 12279828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 397 - 451
Target Start/End: Complemental strand, 44141284 - 44141230
Alignment:
Q  397 tgcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataat 451  Q
    |||||| |||||||||||||||||| |||| |||| |||||||||||||||||||    
T  44141284 tgcaccctgcataaacacttcacaaccatctgatttagtgtacacgtgtaataat 44141230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 368 - 448
Target Start/End: Original strand, 12279641 - 12279724
Alignment:
Q  368 ggcaaaagttatggtgcataaggaaatcct---gcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaat 448  Q
    ||||||||||||||| |||||||||||| |   |||||||| ||||| ||||||||| ||| ||||  ||||||||||||||||    
T  12279641 ggcaaaagttatggtacataaggaaatcattatgcaccgtgtataaagacttcacaaccattagatccagtgtacacgtgtaat 12279724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 451
Target Start/End: Original strand, 48305237 - 48305322
Alignment:
Q  368 ggcaaaagttatggtgcataaggaaatcct---gcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataat 451  Q
    ||||||||||||||||||||||||  ||||   ||||||||||||||||||| |||| |||| |||  ||||||||||| |||||||    
T  48305237 ggcaaaagttatggtgcataaggat-tccttatgcaccgtgcataaacactttacaaacatcggatctagtgtacacgtataataat 48305322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 400 - 496
Target Start/End: Original strand, 33797966 - 33798070
Alignment:
Q  400 accgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataa--------ttttaaaactacaccagatcaaacttcatttgtttcaaaca 491  Q
    |||||||||||||| ||||||| ||||||||  ||| ||||||||||||||        || | |||||||| || ||||||||||||||| ||||||||    
T  33797966 accgtgcataaacatttcacaaccatcagatctagtatacacgtgtaataatcctagacttctcaaactacatcaaatcaaacttcatttgcttcaaaca 33798065  T
Q  492 tttct 496  Q
    |||||    
T  33798066 tttct 33798070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 431
Target Start/End: Original strand, 25778837 - 25778903
Alignment:
Q  368 ggcaaaagttatggtgcataaggaaatcc---tgcaccgtgcataaacacttcacaatcatcagatt 431  Q
    |||||||||||||||||||||| |||| |   ||||| |||||||| |||||||||| |||||||||    
T  25778837 ggcaaaagttatggtgcataagaaaattcttatgcactgtgcataagcacttcacaaccatcagatt 25778903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 451
Target Start/End: Original strand, 48691030 - 48691078
Alignment:
Q  403 gtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataat 451  Q
    ||||||| ||||||||||| ||||||||  |||||||||||||||||||    
T  48691030 gtgcatagacacttcacaaccatcagatctagtgtacacgtgtaataat 48691078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 4e-30; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 368 - 507
Target Start/End: Complemental strand, 33346436 - 33346286
Alignment:
Q  368 ggcaaaagttatggtgcataaggaaatcct---gcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataatttta--------a 456  Q
    ||||||||||||||||||||||||||||||   |||||||||||||||||||||||| ||||| ||  |||||||||||||||||||| ||        |    
T  33346436 ggcaaaagttatggtgcataaggaaatccttatgcaccgtgcataaacacttcacaaccatcaaatctagtgtacacgtgtaataattataggcttctca 33346337  T
Q  457 aactacaccagatcaaacttcatttgtttcaaacatttctctcactaaaac 507  Q
    ||||||  || |||||||||| |||| ||||||||||||||||||||||||    
T  33346336 aactacgtcaaatcaaacttcgtttgcttcaaacatttctctcactaaaac 33346286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 397 - 507
Target Start/End: Complemental strand, 24737724 - 24737606
Alignment:
Q  397 tgcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataatttta--------aaactacaccagatcaaacttcatttgtttcaa 488  Q
    ||||||||||||||||||||||||| ||||||||  |||||||||||||||||||  ||        ||||||||||| ||||||||||||||| |||||    
T  24737724 tgcaccgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttcttaaactacaccaaatcaaacttcatttgcttcaa 24737625  T
Q  489 acatttctctcactaaaac 507  Q
    |||||||||||||||||||    
T  24737624 acatttctctcactaaaac 24737606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 368 - 451
Target Start/End: Original strand, 34399641 - 34399727
Alignment:
Q  368 ggcaaaagttatggtgcataaggaaatcct---gcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataat 451  Q
    ||||||||||||||||||||||||||||||   |||||||  ||||||||||||||||||||||||  |||||||||||||||||||    
T  34399641 ggcaaaagttatggtgcataaggaaatccttatgcaccgtatataaacacttcacaatcatcagatctagtgtacacgtgtaataat 34399727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 403 - 507
Target Start/End: Original strand, 877246 - 877358
Alignment:
Q  403 gtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataattttaa--------aactacaccagatcaaacttcatttgtttcaaacattt 494  Q
    ||||||||||||||||||| ||| |||| | |||||||||| |||||||  |||        |||||||||| ||||||||||||||| |||||||||||    
T  877246 gtgcataaacacttcacaaccattagatcaggtgtacacgtataataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 877345  T
Q  495 ctctcactaaaac 507  Q
    |||||||||||||    
T  877346 ctctcactaaaac 877358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 367 - 451
Target Start/End: Complemental strand, 15035041 - 15034954
Alignment:
Q  367 aggcaaaagttatggtgcataaggaaatcc---tgcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataat 451  Q
    ||||||||||||||||||||||||||||||   |||||||||||||||   ||||||| ||||||||  |||||||| ||||||||||    
T  15035041 aggcaaaagttatggtgcataaggaaatccttatgcaccgtgcataaatcattcacaaccatcagatctagtgtacatgtgtaataat 15034954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 368 - 451
Target Start/End: Original strand, 29157226 - 29157312
Alignment:
Q  368 ggcaaaagttatggtgcataaggaaatcct---gcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataat 451  Q
    ||||||||||||  |||| |||||||||||   ||||||||||||||||||| |||| ||||||||  |||||||||||||||||||    
T  29157226 ggcaaaagttatcatgcacaaggaaatccttatgcaccgtgcataaacactttacaaccatcagatctagtgtacacgtgtaataat 29157312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 371 - 421
Target Start/End: Complemental strand, 12394442 - 12394389
Alignment:
Q  371 aaaagttatggtgcataaggaaatcc---tgcaccgtgcataaacacttcacaa 421  Q
    ||||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  12394442 aaaagttatggtgcataaggaaatccttatgcaccgtgcataaacacttcacaa 12394389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 404 - 451
Target Start/End: Original strand, 18611228 - 18611275
Alignment:
Q  404 tgcataaacacttcacaatcatcagattaagtgtacacgtgtaataat 451  Q
    |||||||||||||||||| ||||||||  |||||||||||||||||||    
T  18611228 tgcataaacacttcacaaccatcagatctagtgtacacgtgtaataat 18611275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 365 - 431
Target Start/End: Original strand, 7089079 - 7089149
Alignment:
Q  365 agaggcaaaagttatggtgcataaggaaatcc----tgcaccgtgcataaacacttcacaatcatcagatt 431  Q
    |||||||||||||||||||||||||  | | |    |||||||||||||||||| ||||||||||||||||    
T  7089079 agaggcaaaagttatggtgcataagttatttccttatgcaccgtgcataaacacatcacaatcatcagatt 7089149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 440
Target Start/End: Original strand, 35119239 - 35119310
Alignment:
Q  368 ggcaaaagttatggtgcataaggaaatcctgcaccgtgcataaacacttcacaatcatcagattaagtgtaca 440  Q
    ||||||||||||||||||||||    |  ||||||||||||||||||||||||| ||||||||  ||||||||    
T  35119239 ggcaaaagttatggtgcataagtcctta-tgcaccgtgcataaacacttcacaaccatcagatctagtgtaca 35119310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 397
Target Start/End: Original strand, 2759826 - 2759855
Alignment:
Q  368 ggcaaaagttatggtgcataaggaaatcct 397  Q
    ||||||||||||||||||||||||||||||    
T  2759826 ggcaaaagttatggtgcataaggaaatcct 2759855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 368 - 507
Target Start/End: Original strand, 27607 - 27757
Alignment:
Q  368 ggcaaaagttatggtgcataaggaaatcct---gcaccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataatttta--------a 456  Q
    ||||||||||||||||||||||||||  ||   | ||||||||||||||||||||||  || ||||  |||||||||||||||||||| ||        |    
T  27607 ggcaaaagttatggtgcataaggaaaaacttatgtaccgtgcataaacacttcacaactataagatctagtgtacacgtgtaataattctaggcttctca 27706  T
Q  457 aactacaccagatcaaacttcatttgtttcaaacatttctctcactaaaac 507  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  27707 aactacaccaaatcaaacttcatttgcttcaaacatttctctcactaaaac 27757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 369 - 451
Target Start/End: Complemental strand, 10739 - 10654
Alignment:
Q  369 gcaaaagttatggtgcataaggaaatcctg---caccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataat 451  Q
    |||||||||||||||||||||||||||||    ||||||||||||||||||||||| ||||||||  ||||| ||  |||||||||    
T  10739 gcaaaagttatggtgcataaggaaatccttatacaccgtgcataaacacttcacaaccatcagatctagtgtgcatatgtaataat 10654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 371 - 451
Target Start/End: Original strand, 7020 - 7103
Alignment:
Q  371 aaaagttatggtgcataaggaaatcctg---caccgtgcataaacacttcacaatcatcagattaagtgtacacgtgtaataat 451  Q
    |||||||||||||||||| |||||| |    ||||||||||||||||||||||| ||||||||  ||||||||| |||||||||    
T  7020 aaaagttatggtgcataacgaaatctttatacaccgtgcataaacacttcacaaccatcagatctagtgtacacatgtaataat 7103  T

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Target: scaffold0189 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 427
Target Start/End: Complemental strand, 11255 - 11193
Alignment:
Q  368 ggcaaaagttatggtgcataaggaaatcc---tgcaccgtgcataaacacttcacaatcatca 427  Q
    |||||||||||||||||||||||||||||   ||||| |||||||| |||||||||| |||||    
T  11255 ggcaaaagttatggtgcataaggaaatccttatgcactgtgcataagcacttcacaaccatca 11193  T

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