View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13809_low_6 (Length: 499)

Name: NF13809_low_6
Description: NF13809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13809_low_6
NF13809_low_6
[»] chr4 (5 HSPs)
chr4 (13-481)||(7095362-7095838)
chr4 (203-260)||(50136542-50136599)
chr4 (204-261)||(42096770-42096827)
chr4 (191-241)||(55301399-55301449)
chr4 (204-261)||(30211978-30212035)
[»] chr6 (2 HSPs)
chr6 (203-261)||(2904753-2904811)
chr6 (203-260)||(28992403-28992460)
[»] chr8 (2 HSPs)
chr8 (191-261)||(5995158-5995228)
chr8 (191-261)||(157515-157585)
[»] chr1 (2 HSPs)
chr1 (204-260)||(14210677-14210733)
chr1 (204-261)||(6960013-6960070)
[»] chr7 (1 HSPs)
chr7 (191-241)||(41909316-41909366)
[»] chr5 (1 HSPs)
chr5 (191-261)||(8254759-8254829)
[»] scaffold0004 (1 HSPs)
scaffold0004 (216-260)||(130710-130754)


Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 13 - 481
Target Start/End: Complemental strand, 7095838 - 7095362
Alignment:
Q  13 aatatacctcggtgtggtttttaaaaaataatggggtgtcaaaatgatagtttccactgtattgttatatcttgatgtctaatgatggcccaagaggatc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7095838 aatatacctcggtgtggtttttaaaaaataatggggtgtcaaaatgatagtttccactgtattgttatatcttgatgtctaatgatggcccaagaggatc 7095739  T
Q  113 tgattcaaactgttggattgggctgtctcagaaaaaagagagttgctcgtctcccatcgatttttgttcattcccatc-------------ctcacgcaa 199  Q
    |||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||| |||||||| |||||| ||||             |||||||||    
T  7095738 tgattcaaactgctggattgggctgtctcaaaaaaaaaagagttgctcgtctcccattgatttttgctcattctcatcctacgtgagttaactcacgcaa 7095639  T
Q  200 gtatattttcaatgtaagttaactcacataagtgtatttttctgtgtgagttaactcacgttcgactatcttacagcaataagcaaaatgagatgggaaa 299  Q
    || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  7095638 gtgtattttcaatgtaagttaactcacataagtgtatttttcagtgtgagttaactcacgttcgactatcttacggcaataagcaaaatgagataggaaa 7095539  T
Q  300 agagcaattatgctnnnnnnnntatcttagtccaatctcaataatattatcttgatggtagtgacagaatatataaaaagagatttaccacttcaatgcc 399  Q
    |||||||| |||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7095538 agagcaatgatgct--aaaaaatatcttagtccaatctcaataatattatcttgatggtagtgacagaatatataaaaagagatttaccacttcaatgcc 7095441  T
Q  400 ttttctaacacaattgaagaagtaaattgaaagaggagaataatgaagatnnnnnnntccaattattcttggttgcacaagg 481  Q
    |||||||||||||||   ||||||||||||||||||||||||||||||||       |||||||||  ||||||||||||||    
T  7095440 ttttctaacacaatt---gaagtaaattgaaagaggagaataatgaagataaaaaaatccaattatctttggttgcacaagg 7095362  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 203 - 260
Target Start/End: Original strand, 50136542 - 50136599
Alignment:
Q  203 tattttcaatgtaagttaactcacataagtgtatttttctgtgtgagttaactcacgt 260  Q
    |||||||| | | |||||||||||||| ||||||||||| ||||||||||||||||||    
T  50136542 tattttcagtttgagttaactcacataggtgtatttttcagtgtgagttaactcacgt 50136599  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 204 - 261
Target Start/End: Original strand, 42096770 - 42096827
Alignment:
Q  204 attttcaatgtaagttaactcacataagtgtatttttctgtgtgagttaactcacgtt 261  Q
    |||||||| || |||||||||||||| ||| ||||||| | |||||||||||||||||    
T  42096770 attttcaacgtgagttaactcacataggtgcatttttcagcgtgagttaactcacgtt 42096827  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 241
Target Start/End: Original strand, 55301399 - 55301449
Alignment:
Q  191 ctcacgcaagtatattttcaatgtaagttaactcacataagtgtatttttc 241  Q
    |||||||| ||| |||||||| || |||| |||||||||||||||||||||    
T  55301399 ctcacgcatgtacattttcaacgtgagttgactcacataagtgtatttttc 55301449  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 261
Target Start/End: Original strand, 30211978 - 30212035
Alignment:
Q  204 attttcaatgtaagttaactcacataagtgtatttttctgtgtgagttaactcacgtt 261  Q
    |||||||| || ||||||||||| || ||| ||||| | |||||||||||||||||||    
T  30211978 attttcaacgtgagttaactcacgtaggtgcattttccagtgtgagttaactcacgtt 30212035  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 203 - 261
Target Start/End: Original strand, 2904753 - 2904811
Alignment:
Q  203 tattttcaatgtaagttaactcacataagtgtatttttctgtgtgagttaactcacgtt 261  Q
    ||||||||| || ||||||||||| || ||||||||||||| |||||||||||||||||    
T  2904753 tattttcaacgtgagttaactcacgtaggtgtatttttctgcgtgagttaactcacgtt 2904811  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 260
Target Start/End: Complemental strand, 28992460 - 28992403
Alignment:
Q  203 tattttcaatgtaagttaactcacataagtgtatttttctgtgtgagttaactcacgt 260  Q
    ||||||||  || ||||||||||| || ||||||||||| | ||||||||||||||||    
T  28992460 tattttcagcgtgagttaactcacgtatgtgtatttttcagcgtgagttaactcacgt 28992403  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 191 - 261
Target Start/End: Original strand, 5995158 - 5995228
Alignment:
Q  191 ctcacgcaagtatattttcaatgtaagttaactcacataagtgtatttttctgtgtgagttaactcacgtt 261  Q
    |||||||| || ||||||| | || ||||||||| |||| ||||||||||| | |||||||||||||||||    
T  5995158 ctcacgcatgtgtattttcgacgtgagttaactcgcatatgtgtatttttcagcgtgagttaactcacgtt 5995228  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 261
Target Start/End: Complemental strand, 157585 - 157515
Alignment:
Q  191 ctcacgcaagtatattttcaatgtaagttaactcacataagtgtatttttctgtgtgagttaactcacgtt 261  Q
    |||||||| ||  ||||||||| | |||||| |||| || ||||||||||| | |||||||||||||||||    
T  157585 ctcacgcatgtgcattttcaatatgagttaattcacgtaggtgtatttttcagcgtgagttaactcacgtt 157515  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 204 - 260
Target Start/End: Original strand, 14210677 - 14210733
Alignment:
Q  204 attttcaatgtaagttaactcacataagtgtatttttctgtgtgagttaactcacgt 260  Q
    |||||||| || |||||||||||||| ||||||||||| | |||||||| |||||||    
T  14210677 attttcaacgtgagttaactcacataggtgtatttttcagcgtgagttatctcacgt 14210733  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 261
Target Start/End: Complemental strand, 6960070 - 6960013
Alignment:
Q  204 attttcaatgtaagttaactcacataagtgtatttttctgtgtgagttaactcacgtt 261  Q
    |||||||| || |||||||| || || ||||||||||| ||||||||||||| |||||    
T  6960070 attttcaacgtgagttaacttacgtaggtgtatttttcagtgtgagttaacttacgtt 6960013  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 241
Target Start/End: Complemental strand, 41909366 - 41909316
Alignment:
Q  191 ctcacgcaagtatattttcaatgtaagttaactcacataagtgtatttttc 241  Q
    |||||||| |||||||||||| ||||||||||||||  |||| ||||||||    
T  41909366 ctcacgcatgtatattttcaacgtaagttaactcacgcaagtatatttttc 41909316  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 261
Target Start/End: Original strand, 8254759 - 8254829
Alignment:
Q  191 ctcacgcaagtatattttcaatgtaagttaactcacataagtgtatttttctgtgtgagttaactcacgtt 261  Q
    |||||||| ||  ||||||| ||| ||||||||||||||  || ||||||| | |||||||||||||||||    
T  8254759 ctcacgcatgtgcattttcagtgtgagttaactcacatatatgcatttttcagcgtgagttaactcacgtt 8254829  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 130754 - 130710
Alignment:
Q  216 agttaactcacataagtgtatttttctgtgtgagttaactcacgt 260  Q
    |||||||||||  | ||||||||||| ||||||||||||||||||    
T  130754 agttaactcacgcaggtgtatttttcagtgtgagttaactcacgt 130710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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