View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13809_low_8 (Length: 399)

Name: NF13809_low_8
Description: NF13809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13809_low_8
NF13809_low_8
[»] chr7 (10 HSPs)
chr7 (200-393)||(41029675-41029878)
chr7 (1-92)||(41029441-41029532)
chr7 (1-69)||(27046088-27046156)
chr7 (1-80)||(10328892-10328971)
chr7 (1-80)||(13278648-13278727)
chr7 (161-208)||(41029603-41029650)
chr7 (1-92)||(5464472-5464563)
chr7 (13-81)||(12501803-12501871)
chr7 (5-81)||(5949492-5949568)
chr7 (1-81)||(25828321-25828401)
[»] scaffold0013 (1 HSPs)
scaffold0013 (1-68)||(54697-54764)
[»] chr8 (3 HSPs)
chr8 (1-69)||(15243603-15243671)
chr8 (18-81)||(12608079-12608142)
chr8 (1-69)||(12563402-12563470)
[»] chr2 (5 HSPs)
chr2 (1-85)||(4653805-4653889)
chr2 (1-86)||(32864561-32864646)
chr2 (1-80)||(22540181-22540260)
chr2 (1-75)||(8271051-8271125)
chr2 (12-86)||(37193067-37193141)
[»] chr3 (3 HSPs)
chr3 (1-85)||(50426095-50426179)
chr3 (2-68)||(17508839-17508905)
chr3 (1-66)||(10877742-10877807)
[»] chr5 (1 HSPs)
chr5 (1-80)||(38697392-38697471)
[»] chr1 (3 HSPs)
chr1 (1-69)||(39997436-39997504)
chr1 (5-66)||(16824042-16824103)
chr1 (1-65)||(43684336-43684400)
[»] chr4 (2 HSPs)
chr4 (5-92)||(54259497-54259583)
chr4 (1-65)||(41940488-41940552)
[»] chr6 (1 HSPs)
chr6 (37-81)||(17915105-17915149)


Alignment Details
Target: chr7 (Bit Score: 165; Significance: 4e-88; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 200 - 393
Target Start/End: Original strand, 41029675 - 41029878
Alignment:
Q  200 ttttcaaatcgttactagagaatgttgagagc----------gttcattggttctctagccgccgctttcctcctccgttcttgtagaaattccccaaca 289  Q
    ||||||||||||||||||||||||||||||||          |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41029675 ttttcaaatcgttactagagaatgttgagagctccgtttccggttcgttggttctctagccgccgctttcctcctccgttcttgtagaaattccccaaca 41029774  T
Q  290 gatcgttaagtcatcaaaatcattgatgaacgctgctgctttcttcacccacctccctactatactccgaagaacaattacaactcctcctcacaccttc 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41029775 gatcgttaagtcatcaaaatcattgatgaacgctgctgctttcttcacccacctccctactatactccgaagaacaattacaactcctcctcacaccttc 41029874  T
Q  390 aaat 393  Q
    ||||    
T  41029875 aaat 41029878  T

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Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 41029441 - 41029532
Alignment:
Q  1 aaggaagggtcacatgcaaggtgctctgcttattggaactgtcctccgcctgacatggaatctctcatcgtgagaaataagtttgagactta 92  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||    
T  41029441 aaggaagggtcacatacaaggtgctctgctcattggaactgtcctccacctgacatggaatctctcatcgtgaaaaataagcttgagactta 41029532  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 27046156 - 27046088
Alignment:
Q  1 aaggaagggtcacatgcaaggtgctctgcttattggaactgtcctccgcctgacatggaatctctcatc 69  Q
    |||||||| ||||||||||||||||||||| | |||||||||| ||||||||||||| |||||||||||    
T  27046156 aaggaaggatcacatgcaaggtgctctgctcactggaactgtcatccgcctgacatgaaatctctcatc 27046088  T

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Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 10328971 - 10328892
Alignment:
Q  1 aaggaagggtcacatgcaaggtgctctgcttattggaactgtcctccgcctgacatggaatctctcatcgtgagaaataa 80  Q
    |||||||| |||||||||| |||||||||| | ||||||  |||||||||||||||||||||||||||| ||||| ||||    
T  10328971 aaggaaggatcacatgcaaagtgctctgctcactggaaccatcctccgcctgacatggaatctctcatcctgagagataa 10328892  T

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Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 13278648 - 13278727
Alignment:
Q  1 aaggaagggtcacatgcaaggtgctctgcttattggaactgtcctccgcctgacatggaatctctcatcgtgagaaataa 80  Q
    |||||||| | ||||||||||||||||||| | |||||| | |||||||||| |||||||||||||||| ||||| ||||    
T  13278648 aaggaaggatgacatgcaaggtgctctgctcactggaaccgccctccgcctgtcatggaatctctcatcctgagagataa 13278727  T

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Target: chr7; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 161 - 208
Target Start/End: Original strand, 41029603 - 41029650
Alignment:
Q  161 ctttataaattttaaaattttccaaggcagtccctaaaattttcaaat 208  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41029603 ctttataaagtttaaaattttccaaggcagtccctaaaattttcaaat 41029650  T

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Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 5464563 - 5464472
Alignment:
Q  1 aaggaagggtcacatgcaaggtgctctgcttattggaactgtcctccgcctgacatggaatctctcatcgtgagaaataagtttgagactta 92  Q
    |||||||| |||||||||||||||| || | | || ||||| |||||| ||||||| |||||||||||| ||||| ||||| |||| |||||    
T  5464563 aaggaaggatcacatgcaaggtgctttggtcactgaaactgccctccgtctgacatagaatctctcatcctgagagataagcttgaaactta 5464472  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 12501803 - 12501871
Alignment:
Q  13 catgcaaggtgctctgcttattggaactgtcctccgcctgacatggaatctctcatcgtgagaaataag 81  Q
    |||||||||||||||||| | |||||||| || || |||| |||||||||| ||||| ||||| |||||    
T  12501803 catgcaaggtgctctgctcactggaactgcccccctcctggcatggaatctttcatcttgagagataag 12501871  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 5949568 - 5949492
Alignment:
Q  5 aagggtcacatgcaaggtgctctgcttattggaactgtcctccgcctgacatggaatctctcatcgtgagaaataag 81  Q
    |||| ||||||||||||| |||| || | ||||| || |||||||| | |||||||||||||||  ||||| |||||    
T  5949568 aaggatcacatgcaaggtactctactcactggaattgccctccgcccggcatggaatctctcattctgagagataag 5949492  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 25828401 - 25828321
Alignment:
Q  1 aaggaagggtcacatgcaaggtgctctgcttattggaactgtcctccgcctgacatggaatctctcatcgtgagaaataag 81  Q
    |||||||| ||||||||||||| | || || |  ||||||||| || ||||  |||||||||||||||| ||||| |||||    
T  25828401 aaggaaggatcacatgcaaggttccctactcaccggaactgtcttctgcctagcatggaatctctcatcctgagagataag 25828321  T

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Target: scaffold0013 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 54764 - 54697
Alignment:
Q  1 aaggaagggtcacatgcaaggtgctctgcttattggaactgtcctccgcctgacatggaatctctcat 68  Q
    |||||||  ||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||    
T  54764 aaggaagaatcacatgcaaggtgctctgctcactggaactgtcctccacctgacatggaatctctcat 54697  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 15243603 - 15243671
Alignment:
Q  1 aaggaagggtcacatgcaaggtgctctgcttattggaactgtcctccgcctgacatggaatctctcatc 69  Q
    |||||||| ||||||||||||||||||||| | |||||||| ||||||| || ||||||||||||||||    
T  15243603 aaggaaggatcacatgcaaggtgctctgctcactggaactgccctccgcttggcatggaatctctcatc 15243671  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 12608079 - 12608142
Alignment:
Q  18 aaggtgctctgcttattggaactgtcctccgcctgacatggaatctctcatcgtgagaaataag 81  Q
    ||||||||||||| |||||||||| |||||| |||||| ||||||||||||| ||||| |||||    
T  12608079 aaggtgctctgctcattggaactgccctccgtctgacacggaatctctcatcctgagagataag 12608142  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 12563402 - 12563470
Alignment:
Q  1 aaggaagggtcacatgcaaggtgctctgcttattggaactgtcctccgcctgacatggaatctctcatc 69  Q
    |||||||| |||||||||||||||| |||| | | |||||| ||||||||||  ||| ||||| |||||    
T  12563402 aaggaaggatcacatgcaaggtgctatgctcactcgaactgccctccgcctggtatgaaatctgtcatc 12563470  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 4653805 - 4653889
Alignment:
Q  1 aaggaagggtcacatgcaaggtgctctgcttattggaactgtcctccgcctgacatggaatctctcatcgtgagaaataagtttg 85  Q
    |||||||| |||||| |||||||||||||| | ||||| ||||||||| |||||||| ||||||||||  ||||| |||||||||    
T  4653805 aaggaaggatcacatacaaggtgctctgctcactggaagtgtcctccgtctgacatgaaatctctcattttgagagataagtttg 4653889  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 32864646 - 32864561
Alignment:
Q  1 aaggaagggtcacatgcaaggtgctctgcttattggaactgtcctccgcctgacatggaatctctcatcgtgagaaataagtttga 86  Q
    |||||| | ||||||  ||||||||||||||| | |||||||| || |||||| |||||||||| |||| ||||| ||||||||||    
T  32864646 aaggaatgatcacatataaggtgctctgcttactagaactgtcatctgcctgaaatggaatctcgcatcttgagagataagtttga 32864561  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 22540181 - 22540260
Alignment:
Q  1 aaggaagggtcacatgcaaggtgctctgcttattggaactgtcctccgcctgacatggaatctctcatcgtgagaaataa 80  Q
    ||||||| ||||||| |||||||||||| |   ||||| || ||||||||||| ||||||||||||||| ||||| ||||    
T  22540181 aaggaagagtcacatacaaggtgctctgttcgctggaattgccctccgcctgatatggaatctctcatcctgagagataa 22540260  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 8271125 - 8271051
Alignment:
Q  1 aaggaagggtcacatgcaaggtgctctgcttattggaactgtcctccgcctgacatggaatctctcatcgtgaga 75  Q
    |||||||  ||||||||||| |||| |||| | ||||| || ||||||||||| ||||||| ||||||| |||||    
T  8271125 aaggaagaatcacatgcaagatgctatgctcactggaattgccctccgcctgatatggaatgtctcatcttgaga 8271051  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 37193067 - 37193141
Alignment:
Q  12 acatgcaaggtgctctgcttattggaactgtcctccgcctgacatggaatctctcatcgtgagaaataagtttga 86  Q
    ||||||||||| |||||||   ||||| || | ||||||||||||||||||||||||  ||| ||||||| ||||    
T  37193067 acatgcaaggtactctgctcgctggaagtgacatccgcctgacatggaatctctcatactgaaaaataagcttga 37193141  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 50426095 - 50426179
Alignment:
Q  1 aaggaagggtcacatgcaaggtgctctgcttattggaactgtcctccgcctgacatggaatctctcatcgtgagaaataagtttg 85  Q
    |||||||| |||||||||| ||||| |||| | |||||||| | |||| ||||||| |||||||||| | |||||||||||||||    
T  50426095 aaggaaggatcacatgcaatgtgctttgctcactggaactgccatccgtctgacattgaatctctcaccttgagaaataagtttg 50426179  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 17508839 - 17508905
Alignment:
Q  2 aggaagggtcacatgcaaggtgctctgcttattggaactgtcctccgcctgacatggaatctctcat 68  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||  ||  |||||| ||||||||    
T  17508839 aggaaggatcacatgcaaggtgctctgcttactggaactgtcctccatctagcatggactctctcat 17508905  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 10877742 - 10877807
Alignment:
Q  1 aaggaagggtcacatgcaaggtgctctgcttattggaactgtcctccgcctgacatggaatctctc 66  Q
    |||||||  ||||||||||||||||| ||| | || | ||| ||||||||||||||| ||||||||    
T  10877742 aaggaagtatcacatgcaaggtgctcggctcactgaatctgccctccgcctgacatgcaatctctc 10877807  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 38697471 - 38697392
Alignment:
Q  1 aaggaagggtcacatgcaaggtgctctgcttattggaactgtcctccgcctgacatggaatctctcatcgtgagaaataa 80  Q
    |||||||| ||||||||||| |||||||||  ||||||||| |||| | ||| |||||||||||||||| ||||| ||||    
T  38697471 aaggaaggatcacatgcaagatgctctgctggttggaactgccctctgtctggcatggaatctctcatcctgagagataa 38697392  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 39997504 - 39997436
Alignment:
Q  1 aaggaagggtcacatgcaaggtgctctgcttattggaactgtcctccgcctgacatggaatctctcatc 69  Q
    |||||| | |||||| |||||||||| ||| | ||||||||  ||||||||||||||||||||||||||    
T  39997504 aaggaatgatcacatccaaggtgctcggctcactggaactgctctccgcctgacatggaatctctcatc 39997436  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 16824103 - 16824042
Alignment:
Q  5 aagggtcacatgcaaggtgctctgcttattggaactgtcctccgcctgacatggaatctctc 66  Q
    |||| ||||||||||||||||||||| | |||||||| |||| | | | |||||||||||||    
T  16824103 aaggatcacatgcaaggtgctctgctcaatggaactgccctctgacgggcatggaatctctc 16824042  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 43684400 - 43684336
Alignment:
Q  1 aaggaagggtcacatgcaaggtgctctgcttattggaactgtcctccgcctgacatggaatctct 65  Q
    |||||| | ||||||| ||||||||||||| ||||||| |  |||| | ||||||||||||||||    
T  43684400 aaggaatgatcacatgtaaggtgctctgctcattggaattaccctctgtctgacatggaatctct 43684336  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 54259497 - 54259583
Alignment:
Q  5 aagggtcacatgcaaggtgctctgcttattggaactgtcctccgcctgacatggaatctctcatcgtgagaaataagtttgagactta 92  Q
    |||| ||||||||| ||||||||||| | || ||||||||||||||| ||||  ||||||||||| | ||| |||||||||| |||||    
T  54259497 aaggatcacatgcacggtgctctgctgagtgaaactgtcctccgcctaacataaaatctctcatcct-agagataagtttgaaactta 54259583  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 41940552 - 41940488
Alignment:
Q  1 aaggaagggtcacatgcaaggtgctctgcttattggaactgtcctccgcctgacatggaatctct 65  Q
    |||||||| |||||||||||||| ||||||   | ||||| |||||||||||||||| |||||||    
T  41940552 aaggaaggatcacatgcaaggtgttctgctcgctagaactatcctccgcctgacatgaaatctct 41940488  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 17915105 - 17915149
Alignment:
Q  37 aactgtcctccgcctgacatggaatctctcatcgtgagaaataag 81  Q
    ||||| |||||||||| |||||||||||||||| ||||| |||||    
T  17915105 aactgccctccgcctggcatggaatctctcatcttgagagataag 17915149  T

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