View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1380_high_14 (Length: 408)
Name: NF1380_high_14
Description: NF1380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1380_high_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 30 - 399
Target Start/End: Original strand, 29177596 - 29177970
Alignment:
| Q |
30 |
gattgaactctcaagttttggtgattgttgctggaccaaactatgtctatgtccatctaactttcatgtcaaaaagaaaagatacaaagtgctgagagag |
129 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29177596 |
gattgaactctcaagttttggtgatttttgctggaccaaactatgtctatgtccatctaactttcatgtcaaaaagaaaagatacaaagtgctgagagag |
29177695 |
T |
|
| Q |
130 |
acttatcattaggagggtagtcaaaattgcatatataatgtgtttagaaagatctttcnnnnnnnnntatttgtgtttagaaagagttattaagaaagta |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
29177696 |
acttatcattaggagggtagtcaaaattgcatatataatgtgtttagaaagatgtttcaaaaaaatatatttgtgtttagaaagagttattaagaaagta |
29177795 |
T |
|
| Q |
230 |
atttactatgaaatattaaatataactaagattaatttgtacacgccgacgatataannnnnnnatcaagacataatttagtttcattatttgtcataat |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
29177796 |
atttactatgaaatattaaatataactaagattaatttgtacacgccgatgatataatttttttatcaagacataatttagtctcattatttgtcataat |
29177895 |
T |
|
| Q |
330 |
a-nnnnnnnnctcagttacatacataaatatgtaaatg----gtaaaatctaattgaatgcatgtgtagaattat |
399 |
Q |
| |
|
| ||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
29177896 |
atttttttttctctgttacatacataaatatgtaaatggggagtaaaatctaattgaatgtatgtgtagaattat |
29177970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University