View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1380_high_19 (Length: 363)
Name: NF1380_high_19
Description: NF1380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1380_high_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 30 - 351
Target Start/End: Complemental strand, 3609422 - 3609101
Alignment:
| Q |
30 |
tatgtctcacaaacacactatatatagagcatctcatatactcattcactgtcttttgatcaatataattttttatgtatcttactttcacttgatttat |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3609422 |
tatgtctcacaaacacactatatatagagcatctcatatactcattcatcgtcttttgatcaatataattttttatgtatcttactttcacttgatttat |
3609323 |
T |
|
| Q |
130 |
aaagctcnnnnnnncttcttatgctcaaaatcttaatatggtatcagagcttggttgtgatcttcacgatgccgctatttcactgcgatttttcgagtga |
229 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||| |||||||||| |||||||||||||| |
|
|
| T |
3609322 |
aaagctctttttttcttcttatgctcaaaattttaatatggtatcagagcctggttgtgatcttcatgatgccgttatttcactgtgatttttcgagtga |
3609223 |
T |
|
| Q |
230 |
tcattgatccaccaacctttctcatggcctatgccattctctgccatttatggaagccttcaaaagtggaaaggaaattcacacctctgtcacttcttcc |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3609222 |
tcattgatccaccaacctttctcatggcctatgccattctctgccatttatggaagccttcaaaagtggaaaggaaattcacacctctgtcacttcttcc |
3609123 |
T |
|
| Q |
330 |
atccactctcaaaaacaagaat |
351 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
3609122 |
atccactctcaaaaacaagaat |
3609101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 117
Target Start/End: Complemental strand, 3608833 - 3608747
Alignment:
| Q |
31 |
atgtctcacaaacacactatatatagagcatctcatatactcattcactgtcttttgatcaatataattttttatgtatcttacttt |
117 |
Q |
| |
|
||||||||||| | | |||||||| |||||||||| || ||||||| | | ||||||||| ||||||||| |||| || ||||||| |
|
|
| T |
3608833 |
atgtctcacaagctctttatatataaagcatctcatgtattcattcaatatattttgatcattataattttctatgaattttacttt |
3608747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 39219773 - 39219705
Alignment:
| Q |
233 |
ttgatccaccaacctttctcatggcctatgccattctctgccatttatggaagccttcaaaagtggaaa |
301 |
Q |
| |
|
|||||||||||| ||| ||| ||||||| ||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
39219773 |
ttgatccaccaagatttatcacggcctattccattctctgccatttatggaagatttcaaaaatggaaa |
39219705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 36572294 - 36572237
Alignment:
| Q |
75 |
tcactgtcttttgatcaatataattttttatgtatcttactttcacttgatttataaa |
132 |
Q |
| |
|
||||| ||||||||||||||||||||| || || |||||||||||||| ||||||| |
|
|
| T |
36572294 |
tcactatcttttgatcaatataattttcaataaattttactttcacttgagttataaa |
36572237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University