View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1380_high_20 (Length: 352)
Name: NF1380_high_20
Description: NF1380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1380_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 50 - 339
Target Start/End: Complemental strand, 52340744 - 52340455
Alignment:
| Q |
50 |
tatgataagccaatatgcgtaaacagcacacttaccattgagttgctgaatttattttgcagataattagttatcaagaccaaaggaacctatataaaaa |
149 |
Q |
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| T |
52340744 |
tatgataagccaatatgcgtaaacagcacacttaccattgagttgctgaatttattttgcagataattagttatcaagaccaaaggaacctatataaaaa |
52340645 |
T |
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| Q |
150 |
agacgttcattatcatgtaaggcgaaccaaatattaataataaggatgatctttatgattatcgactatttccacaatgtggcaaactaatgtttgaatc |
249 |
Q |
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| T |
52340644 |
agacgttcattatcatgtaaggcgaaccaaatattaataataaggatgatctttatgattatcgactatttccacaatgtggcaaactaatgtttgaatc |
52340545 |
T |
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| Q |
250 |
tcaattgggagagatgcccacatttagtgtgcaacagtaccctgaaaaagttatttgcggtggagagaacctatgaaagactaataagaa |
339 |
Q |
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| T |
52340544 |
tcaattgggagagatgcccacatttagtgtgcgacagtaccccgaaaaagttatttgcggtggagagaacctatgaaagactaataagaa |
52340455 |
T |
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Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 41468379 - 41468329
Alignment:
| Q |
1 |
gtaatgtcaggtgtatgggtatttgacaagaaaggtgtggtgaggttaata |
51 |
Q |
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| T |
41468379 |
gtaatgtcaggtgtatgggtatttgacaagaaaggtgtggtgaggttaata |
41468329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 17516146 - 17516207
Alignment:
| Q |
82 |
taccattgagttgctgaatttattttgcagataattagttatcaagaccaaaggaacctata |
143 |
Q |
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| T |
17516146 |
taccattgagtttctgtatttatttttcaggtaattggtgatcaagaccaaaggaacctata |
17516207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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