View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1380_high_27 (Length: 330)

Name: NF1380_high_27
Description: NF1380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1380_high_27
NF1380_high_27
[»] chr1 (3 HSPs)
chr1 (30-320)||(23987873-23988163)
chr1 (33-296)||(13443495-13443756)
chr1 (33-248)||(28660254-28660469)
[»] chr2 (5 HSPs)
chr2 (33-297)||(33051866-33052130)
chr2 (115-320)||(33054024-33054230)
chr2 (68-308)||(27955719-27955959)
chr2 (68-260)||(31634440-31634632)
chr2 (173-262)||(40749790-40749879)
[»] chr8 (6 HSPs)
chr8 (33-308)||(18180217-18180491)
chr8 (33-307)||(26375187-26375461)
chr8 (46-308)||(42890683-42890945)
chr8 (33-305)||(5646574-5646845)
chr8 (33-308)||(42891199-42891474)
chr8 (68-308)||(23570781-23571021)
[»] chr6 (4 HSPs)
chr6 (33-314)||(8048470-8048752)
chr6 (36-198)||(14238858-14239020)
chr6 (162-306)||(24442701-24442845)
chr6 (33-305)||(18717722-18717993)
[»] chr5 (1 HSPs)
chr5 (33-308)||(19496809-19497084)
[»] scaffold0240 (1 HSPs)
scaffold0240 (33-308)||(16323-16597)
[»] chr7 (5 HSPs)
chr7 (49-266)||(24840515-24840732)
chr7 (42-199)||(1368319-1368473)
chr7 (119-230)||(1786200-1786311)
chr7 (211-308)||(4300747-4300844)
chr7 (240-320)||(1366930-1367010)
[»] chr3 (1 HSPs)
chr3 (33-206)||(43306306-43306479)
[»] chr4 (8 HSPs)
chr4 (33-153)||(22923526-22923646)
chr4 (33-153)||(22928179-22928299)
chr4 (33-153)||(22984458-22984578)
chr4 (33-153)||(22998046-22998166)
chr4 (44-112)||(22720669-22720737)
chr4 (33-159)||(22768297-22768411)
chr4 (114-154)||(22721471-22721511)
chr4 (263-306)||(22691515-22691558)


Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 30 - 320
Target Start/End: Complemental strand, 23988163 - 23987873
Alignment:
Q  30 ataaaaacaaagtgtttagcaatatcattaatcgtcttacacgagttacctgccattctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  23988163 ataaaaacaaagtgtttagcaatatcattaatcgtcttacacgagttacctgccattctggaagcatgtctcaaaaggtcggtcaaggagtaatctttgt 23988064  T
Q  130 tgtaacaaaacgtacaacgatatatcgaattagagattttaaacttgtagtaatcatccttcaacttgttgtaatatatacgctcataatattccaaatc 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||    
T  23988063 tgtaacaaaacgtacaacgatatatcgaattagagattttaaacttgtagtaatcatccttcaacttgttgtaatatatacactcatagtattccagatc 23987964  T
Q  230 agattcacaggtatattctgattttcggtacatatcaatagtatgattgttattaagaaccctaataaccagaattggtcatccttctctg 320  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23987963 agattcataggtatattctgattttcggtacatatcaatagtatgattgttattaagaaccctaataaccagaattggtcatccttctctg 23987873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 33 - 296
Target Start/End: Original strand, 13443495 - 13443756
Alignment:
Q  33 aaaacaaagtgtttagcaatatcattaatcgtcttacacgagttacctgccattctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgttgt 132  Q
    |||||| | ||| |||||||||| ||||||| |||||  ||||||||||  ||||  ||||||||||||||||||||||  |||||||||||||||||||    
T  13443495 aaaacagaatgtctagcaatatctttaatcggcttacgtgagttacctgatattccggaagcatgtctcaaaaggtcgg--aaggagtaatctttgttgt 13443592  T
Q  133 aacaaaacgtacaacgatatatcgaattagagattttaaacttgtagtaatcatccttcaacttgttgtaatatatacgctcataatattccaaatcaga 232  Q
    ||||||| | ||||||||||||||||| |||||||| ||| ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||    
T  13443593 aacaaaatggacaacgatatatcgaatcagagatttcaaatttgtagtaatcatccgtcaacctgttgtaatatctacgctcataatattccaaatcaga 13443692  T
Q  233 ttcacaggtatattctgattttcggtacatatcaatagtatgattgttattaagaaccctaata 296  Q
    |  |  || ||||| ||||||||||||| || ||| |||| |  ||||||||  ||||||||||    
T  13443693 tgaattggcatattttgattttcggtacgtaacaacagtagggatgttattacaaaccctaata 13443756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 33 - 248
Target Start/End: Original strand, 28660254 - 28660469
Alignment:
Q  33 aaaacaaagtgtttagcaatatcattaatcgtcttacacgagttacctgccattctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgttgt 132  Q
    |||||| | |||||||||||||| |||| ||| ||||  ||||||||||||| |||  |||||||| ||||||||| ||| |||||||||| |||||||     
T  28660254 aaaacataatgtttagcaatatctttaaccgttttacgtgagttacctgccaatctgaaagcatgtttcaaaaggttggtcaaggagtaatttttgttgc 28660353  T
Q  133 aacaaaacgtacaacgatatatcgaattagagattttaaacttgtagtaatcatccttcaacttgttgtaatatatacgctcataatattccaaatcaga 232  Q
    ||||||| | ||||||||||||| ||| ||||||||||||||||||||||| |||||||| ||| ||||||||| |||||||||| ||||||| ||||||    
T  28660354 aacaaaatggacaacgatatatcaaatcagagattttaaacttgtagtaattatccttcagctttttgtaatatctacgctcatagtattccatatcaga 28660453  T
Q  233 ttcacaggtatattct 248  Q
    ||||||||||| ||||    
T  28660454 ttcacaggtatgttct 28660469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 161; Significance: 8e-86; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 33 - 297
Target Start/End: Complemental strand, 33052130 - 33051866
Alignment:
Q  33 aaaacaaagtgtttagcaatatcattaatcgtcttacacgagttacctgccattctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgttgt 132  Q
    |||| ||| |||||| ||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||     
T  33052130 aaaataaaatgtttaacaatatctttaatcgtcttacgcgagttacctgccattctggaagcatgtctcaaaaggttggtcaaggagtaatctttgttgc 33052031  T
Q  133 aacaaaacgtacaacgatatatcgaattagagattttaaacttgtagtaatcatccttcaacttgttgtaatatatacgctcataatattccaaatcaga 232  Q
    ||||||| | | ||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||| |||||||||| ||||||||||||||    
T  33052030 aacaaaatggataacgatatatcgaatcagagattttaaacttgtagtaatcaacattcaacttgttgtaatatctacgctcatagtattccaaatcaga 33051931  T
Q  233 ttcacaggtatattctgattttcggtacatatcaatagtatgattgttattaagaaccctaataa 297  Q
    | ||| | ||| |||||||||||||||| || |||||||||| ||||||||| |||||| |||||    
T  33051930 tccacggatatgttctgattttcggtacgtaacaatagtatggttgttattacgaaccccaataa 33051866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 115 - 320
Target Start/End: Original strand, 33054024 - 33054230
Alignment:
Q  115 aggagtaatctttgttgtaacaaaacgtacaacgatatatcgaattagagattttaaacttgtagtaatcatccttcaacttgttgtaatatatacgctc 214  Q
    |||||||||||||||| || ||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  33054024 aggagtaatctttgttatagcaaaacggacaacgatatatcgaatcagagattttaaactcgtagtaatcatccttcaacttgttgtaatatttacgctc 33054123  T
Q  215 ataatattcc-aaatcagattcacaggtatattctgattttcggtacatatcaatagtatgattgttattaagaaccctaataaccagaattggtcatcc 313  Q
    ||| |||||| |||| ||||||||  |||| |||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33054124 atagtattccaaaattagattcacgagtatgttctgattttcggtacgtaacaatagtatgattgttattacgaaccctaataaccagaattggtcatcc 33054223  T
Q  314 ttctctg 320  Q
    | |||||    
T  33054224 tcctctg 33054230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 68 - 308
Target Start/End: Original strand, 27955719 - 27955959
Alignment:
Q  68 acacgagttacctgccattctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgttgtaacaaaacgtacaacgatatatcgaattagagatt 167  Q
    ||||||||||||||| |||||  ||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||  ||||||    
T  27955719 acacgagttacctgcaattctgaaagcatgtctcaaaaggccggtcaaggagtaatctttgttgtaacaaaacggacaacgatatatcgaatcggagatt 27955818  T
Q  168 ttaaacttgtagtaatcatccttcaacttgttgtaatatatacgctcataatattccaaatcagattcacaggtatattctgattttcggtacatatcaa 267  Q
    | ||| ||||| ||||||||||||||| |  |||||||| |||||||||| ||||||||||||||||||  | |||||| ||||||||||||| || |||    
T  27955819 tcaaatttgtaataatcatccttcaaccttgtgtaatatctacgctcatagtattccaaatcagattcattgctatattttgattttcggtacgtaacaa 27955918  T
Q  268 tagtatgattgttattaagaaccctaataaccagaattggt 308  Q
    ||||| |  ||||||||  ||||||||||||  ||||||||    
T  27955919 tagtagggatgttattacaaaccctaataactggaattggt 27955959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 68 - 260
Target Start/End: Complemental strand, 31634632 - 31634440
Alignment:
Q  68 acacgagttacctgccattctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgttgtaacaaaacgtacaacgatatatcgaattagagatt 167  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||  |||||||||||||||||||||||||| | ||||||||||||||||| |||||||    
T  31634632 acacgagttacctgcaattctggaagcatgtctcaaaaggtcggacaaggagtaatctttgttgtaacaaaatggacaacgatatatcgaatcagagatt 31634533  T
Q  168 ttaaacttgtagtaatcatccttcaacttgttgtaatatatacgctcataatattccaaatcagattcacaggtatattctgattttcggtac 260  Q
    | ||| |||||||||||||||||||| ||  |||||||| |||||||||| ||||||||||| ||||||  | | |||| |||||||||||||    
T  31634532 tcaaatttgtagtaatcatccttcaattttgtgtaatatctacgctcatagtattccaaatctgattcattgctgtattttgattttcggtac 31634440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 262
Target Start/End: Complemental strand, 40749879 - 40749790
Alignment:
Q  173 cttgtagtaatcatccttcaacttgttgtaatatatacgctcataatattccaaatcagattcacaggtatattctgattttcggtacat 262  Q
    ||||||||||||||| ||||| |  ||||||||| | ||||  || || |||||||||||||||   || | ||||||||||||||||||    
T  40749879 cttgtagtaatcatctttcaaatctttgtaatatctgcgcttgtagtactccaaatcagattcatgagtctgttctgattttcggtacat 40749790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 160; Significance: 3e-85; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 33 - 308
Target Start/End: Original strand, 18180217 - 18180491
Alignment:
Q  33 aaaacaaagtgtttagcaatatcattaatcgtcttacacgagttacctgccattctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgttgt 132  Q
    |||||| | ||||| |||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||| || |||||||||| ||||||||    
T  18180217 aaaacagaatgtttggcaatatccttaatcgtcttacgcgagttacctgccattctggaagcatgtctcaaaaggtcagtaaaggagtaatatttgttgt 18180316  T
Q  133 aacaaaacgtacaacgatatatcgaattagagattttaaacttgtagtaatcatccttcaacttgttgtaatatatacgctcataatattccaaatcaga 232  Q
    ||||||||| |||||||||| || |||  ||||||||||||| ||||||||||||||||||||||||||||||| || ||||| | ||||||||||||||    
T  18180317 aacaaaacggacaacgatatttcaaatcggagattttaaactcgtagtaatcatccttcaacttgttgtaatatctatgctcacagtattccaaatcaga 18180416  T
Q  233 ttcacaggtatattctgattttcggtacatatcaatagtatgattgttattaagaaccctaataaccagaattggt 308  Q
    ||||| ||||| |||||||||||| |||||| |||||||| | ||||||||| ||||||||||||||  |||||||    
T  18180417 ttcac-ggtatgttctgattttcgctacataacaatagtagggttgttattacgaaccctaataaccgaaattggt 18180491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 33 - 307
Target Start/End: Complemental strand, 26375461 - 26375187
Alignment:
Q  33 aaaacaaagtgtttagcaatatcattaatcgtcttacacgagttacctgccattctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgttgt 132  Q
    |||||| | |||||| ||||||| ||||||||||||| ||||||||||||||||||  ||||||||||||||||||| || ||||||||||||||| |||    
T  26375461 aaaacagaatgtttaacaatatccttaatcgtcttacgcgagttacctgccattctataagcatgtctcaaaaggtcagtcaaggagtaatctttggtgt 26375362  T
Q  133 aacaaaacgtacaacgatatatcgaattagagattttaaacttgtagtaatcatccttcaacttgttgtaatatatacgctcataatattccaaatcaga 232  Q
    ||||||||| |||| ||||| | |||| ||||||||||||||  |||||||||||||||||||||||||||||| |||||||||| |||| |||||||||    
T  26375361 aacaaaacggacaatgatattttgaatcagagattttaaactcatagtaatcatccttcaacttgttgtaatatctacgctcatagtattacaaatcaga 26375262  T
Q  233 ttcacaggtatattctgattttcggtacatatcaatagtatgattgttattaagaaccctaataaccagaattgg 307  Q
    ||||| | ||| |||| |||||||||||||| |||||||| | ||||||||| |||||||| ||||| |||||||    
T  26375261 ttcacggatatgttctaattttcggtacataacaatagtagggttgttattacgaaccctactaaccggaattgg 26375187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 46 - 308
Target Start/End: Complemental strand, 42890945 - 42890683
Alignment:
Q  46 tagcaatatcattaatcgtcttacacgagttacctgccattctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgttgtaacaaaacgtaca 145  Q
    |||||||||| |||| ||||||||  |||||| | || ||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||| |||    
T  42890945 tagcaatatctttaaccgtcttacgtgagttatcagctattctggaagcatgtctcaaaaggtcggacaaggagtaatctttgttgtaacaaaacggaca 42890846  T
Q  146 acgatatatcgaattagagattttaaacttgtagtaatcatccttcaacttgttgtaatatatacgctcataatattccaaatcagattcacaggtatat 245  Q
    |||||||| |||||  ||||||| || || ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||  || ||||    
T  42890845 acgatataccgaatcggagatttcaatctcgtagtaatcatccgtcaacttgttgtaatatctacgctcataatattccaaatcagattcatcggcatat 42890746  T
Q  246 tctgattttcggtacatatcaatagtatgattgttattaagaaccctaataaccagaattggt 308  Q
    | | ||||||||||| || ||||| || |  ||||||||  ||||||||||||| ||||||||    
T  42890745 tttaattttcggtacgtaacaataatagggatgttattacaaaccctaataaccggaattggt 42890683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 33 - 305
Target Start/End: Original strand, 5646574 - 5646845
Alignment:
Q  33 aaaacaaagtgtttagcaatatcattaatcgtcttacacgagttacctgccattctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgttgt 132  Q
    |||||| ||||||| |||||||| |||  |||||||| |||||||||||||||| |  || ||| ||||||||||||||| || ||||||||||||||||    
T  5646574 aaaacagagtgtttggcaatatctttatccgtcttacgcgagttacctgccattatgaaatcat-tctcaaaaggtcggtcaaagagtaatctttgttgt 5646672  T
Q  133 aacaaaacgtacaacgatatatcgaattagagattttaaacttgtagtaatcatccttcaacttgttgtaatatatacgctcataatattccaaatcaga 232  Q
    ||||||||| |||||||| ||||||||  |||||||||||||||||||||||||||||||| || ||||||||| |||  ||||| || |||||||||||    
T  5646673 aacaaaacggacaacgatgtatcgaatcggagattttaaacttgtagtaatcatccttcaattttttgtaatatctacattcatagtactccaaatcaga 5646772  T
Q  233 ttcacaggtatattctgattttcggtacatatcaatagtatgattgttattaagaaccctaataaccagaatt 305  Q
    || |||||||| || | |||||| |||| ||| | ||||||| ||||||||| ||||||||||||| ||||||    
T  5646773 tttacaggtatgttttaattttctgtacgtataagtagtatggttgttattacgaaccctaataactagaatt 5646845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 33 - 308
Target Start/End: Original strand, 42891199 - 42891474
Alignment:
Q  33 aaaacaaagtgtttagcaatatcattaatcgtcttacacgagttacctgccattctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgttgt 132  Q
    |||||| | ||| |||||||||| |||| | ||||||  |||||| | || ||||| ||||||||||||||||||||||   ||||||||||||||||||    
T  42891199 aaaacagaatgtctagcaatatctttaaccttcttacgtgagttatcagctattctggaagcatgtctcaaaaggtcggactaggagtaatctttgttgt 42891298  T
Q  133 aacaaaacgtacaacgatatatcgaattagagattttaaacttgtagtaatcatccttcaacttgttgtaatatatacgctcataatattccaaatcaga 232  Q
    ||||||||| ||||||||||| |||||  ||||||| || || ||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||    
T  42891299 aacaaaacggacaacgatataccgaatcggagatttcaatctcgtagtaatcatccgtcaacttgttgtaatatctacactcataatattccaaatcaga 42891398  T
Q  233 ttcacaggtatattctgattttcggtacatatcaatagtatgattgttattaagaaccctaataaccagaattggt 308  Q
    ||||  |  ||||| ||||||||||||| || ||||| || |  ||||||||  ||||||||||||| ||||||||    
T  42891399 ttcattgacatattttgattttcggtacgtaacaataatagggatgttattacaaaccctaataaccggaattggt 42891474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 68 - 308
Target Start/End: Complemental strand, 23571021 - 23570781
Alignment:
Q  68 acacgagttacctgccattctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgttgtaacaaaacgtacaacgatatatcgaattagagatt 167  Q
    ||||||||||| | | ||||| ||||||||||||||||||||||  ||||||||||||||| |||||||||||| |||||||||||| ||||  ||||||    
T  23571021 acacgagttacgtacaattctggaagcatgtctcaaaaggtcggacaaggagtaatctttgctgtaacaaaacggacaacgatatattgaatcggagatt 23570922  T
Q  168 ttaaacttgtagtaatcatccttcaacttgttgtaatatatacgctcataatattccaaatcagattcacaggtatattctgattttcggtacatatcaa 267  Q
    | ||| ||||||||||||||||||||| |  |||||||| |||||||||| ||||||||||||||||||  | ||||||  |||||||||||| || |||    
T  23570921 tcaaatttgtagtaatcatccttcaaccttgtgtaatatctacgctcatagtattccaaatcagattcattgctatatttggattttcggtacgtaacaa 23570822  T
Q  268 tagtatgattgttattaagaaccctaataaccagaattggt 308  Q
    || || |  |||||||| |||| || |||||  ||||||||    
T  23570821 taatagggatgttattacgaactctgataacttgaattggt 23570781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 159; Significance: 1e-84; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 33 - 314
Target Start/End: Original strand, 8048470 - 8048752
Alignment:
Q  33 aaaacaaagtgtttagcaatatcattaatcgtcttacacgagttacctgccattctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgttgt 132  Q
    |||||| |||||||||||||||| ||||| || ||||  ||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  8048470 aaaacagagtgtttagcaatatctttaattgtgttacgtgagttacctgctattctggaagcatgtctcaaaaggtcggtcaaggagtaatctttgttgt 8048569  T
Q  133 aacaaaacgtacaacgatatatcgaattagagattttaaacttgtagtaatcatccttcaacttgttgtaatatatacgctcataatattccaaatcaga 232  Q
    ||||||||| ||||||||||||| | || |||||||||||||||||||||||||||  ||| |||||||||||| |||||||||| ||||||||||||||    
T  8048570 aacaaaacgaacaacgatatatcaatttggagattttaaacttgtagtaatcatccggcaatttgttgtaatatctacgctcatagtattccaaatcaga 8048669  T
Q  233 ttcacaggtatattctgattttcggtacatatcaatagtatgattgttattaagaa-ccctaataaccagaattggtcatcct 314  Q
    ||||||||||| |||||||||| ||||| || |||||||||| || |||||| |||  |||||||| | ||||||||| ||||    
T  8048670 ttcacaggtatgttctgatttttggtacgtaacaatagtatgttttttattacgaaggcctaataatcggaattggtcctcct 8048752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 36 - 198
Target Start/End: Complemental strand, 14239020 - 14238858
Alignment:
Q  36 acaaagtgtttagcaatatcattaatcgtcttacacgagttacctgccattctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgttgtaac 135  Q
    ||||| ||||||| |||||| ||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |     
T  14239020 acaaaatgtttagaaatatccttaatcgccttacgcgagttacctgccattctagaagcatgtctcaaaaggtcggtcaaggagtaatctttgttgtcaa 14238921  T
Q  136 aaaacgtacaacgatatatcgaattagagattttaaacttgtagtaatcatccttcaacttgt 198  Q
     ||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  14238920 gaaacggacaacgatatatcgaatcagagattttaaactagtagtaatcatccttcaacttgt 14238858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 162 - 306
Target Start/End: Original strand, 24442701 - 24442845
Alignment:
Q  162 gagattttaaacttgtagtaatcatccttcaacttgttgtaatatatacgctcataatattccaaatcagattcacaggtatattctgattttcggtaca 261  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||  ||||||||||||||||||||||     
T  24442701 gagattttaaacttgtagtaatcatccttcaacatgttgtaatatctacgctcatagtattccaaatcagattcatgggtatattctgattttcggtacg 24442800  T
Q  262 tatcaatagtatgattgttattaagaaccctaataaccagaattg 306  Q
    || |||||||||| ||||||| | |||||||||||||| ||||||    
T  24442801 taacaatagtatggttgttataatgaaccctaataaccggaattg 24442845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 33 - 305
Target Start/End: Original strand, 18717722 - 18717993
Alignment:
Q  33 aaaacaaagtgtttagcaatatcattaatcgtcttacacgagttacctgccattctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgttgt 132  Q
    |||||| | ||| |||||||||| ||||  ||| |||  |||||| || | ||||| |||||| |||| |||||| |||| || ||||||||||||||||    
T  18717722 aaaacagattgtctagcaatatctttaactgtcctacgtgagttatctacaattctggaagcacgtctaaaaagg-cggtcaaagagtaatctttgttgt 18717820  T
Q  133 aacaaaacgtacaacgatatatcgaattagagattttaaacttgtagtaatcatccttcaacttgttgtaatatatacgctcataatattccaaatcaga 232  Q
    ||||||||| |||||||||||| ||||  ||||||| ||| |||||| |||||||||||||||   |||| ||| || ||||||| ||||||||||||||    
T  18717821 aacaaaacggacaacgatatatggaatcggagatttcaaatttgtagaaatcatccttcaactatgtgtactatctatgctcatagtattccaaatcaga 18717920  T
Q  233 ttcacaggtatattctgattttcggtacatatcaatagtatgattgttattaagaaccctaataaccagaatt 305  Q
    | || |||||| || ||||||||||||| || |||||||  |  ||||||||  ||||||||||||| |||||    
T  18717921 tacataggtatgttttgattttcggtacgtaacaatagttgggatgttattacaaaccctaataaccggaatt 18717993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 33 - 308
Target Start/End: Original strand, 19496809 - 19497084
Alignment:
Q  33 aaaacaaagtgtttagcaatatcattaatcgtcttacacgagttacctgccattctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgttgt 132  Q
    |||||||| ||| |||||||||| |||||||||||||| ||||||||||| ||||| ||||||||||||| ||||||||| ||| |||||||||||||||    
T  19496809 aaaacaaaatgtatagcaatatccttaatcgtcttacatgagttacctgctattctggaagcatgtctcagaaggtcggtcaagaagtaatctttgttgt 19496908  T
Q  133 aacaaaacgtacaacgatatatcgaattagagattttaaacttgtagtaatcatccttcaacttgttgtaatatatacgctcataatattccaaatcaga 232  Q
    ||||||||  ||| |||||| ||||||   |||||||||||| || ||||||||||||||| || || |||||  |||| ||||| ||||||||||||||    
T  19496909 aacaaaacagacagcgatatttcgaatcgtagattttaaactcgttgtaatcatccttcaatttattttaatacctacgttcatagtattccaaatcaga 19497008  T
Q  233 ttcacaggtatattctgattttcggtacatatcaatagtatgattgttattaagaaccctaataaccagaattggt 308  Q
    || ||  |||  | ||||||||||||||||| |||||||||| ||||||||| |||||||||||||  ||||||||    
T  19497009 ttaacgagtaagtgctgattttcggtacataacaatagtatggttgttattacgaaccctaataactggaattggt 19497084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 33 - 308
Target Start/End: Complemental strand, 16597 - 16323
Alignment:
Q  33 aaaacaaagtgtttagcaatatcattaatcgtcttacacgagttacctgccattctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgttgt 132  Q
    |||||| ||||||| |||||||| |||  |||||||| |||||||||||||||| |  || ||| ||||||||||||||| || ||||||||||||||||    
T  16597 aaaacagagtgtttggcaatatctttatccgtcttacgcgagttacctgccattatgaaatcat-tctcaaaaggtcggtcaaagagtaatctttgttgt 16499  T
Q  133 aacaaaacgtacaacgatatatcgaattagagattttaaacttgtagtaatcatccttcaacttgttgtaatatatacgctcataatattccaaatcaga 232  Q
    ||||||| | ||||| |||||||||||   ||||||||||||||||||||||||||||||   | ||||||| | || ||||||| | | | ||||||||    
T  16498 aacaaaatggacaacaatatatcgaatctaagattttaaacttgtagtaatcatccttcagtgttttgtaatgtctatgctcatactctactaaatcaga 16399  T
Q  233 ttcacaggtatattctgattttcggtacatatcaatagtatgattgttattaagaaccctaataaccagaattggt 308  Q
    ||||| ||||| ||| ||||||| ||||||| || ||||||| ||||||||| || |||||||||||| |||||||    
T  16398 ttcacgggtatgttcagattttctgtacataacagtagtatggttgttattatgagccctaataaccaaaattggt 16323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 49 - 266
Target Start/End: Complemental strand, 24840732 - 24840515
Alignment:
Q  49 caatatcattaatcgtcttacacgagttacctgccattctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgttgtaacaaaacgtacaacg 148  Q
    ||||||| |||| ||| |||  |||||||||| ||||||| ||||||||||||||||||||||| |||||||||  |||||||||| |||||| ||||||    
T  24840732 caatatctttaaccgttttatgcgagttacctaccattcttgaagcatgtctcaaaaggtcggtcaaggagtaacttttgttgtaaaaaaacggacaacg 24840633  T
Q  149 atatatcgaattagagattttaaacttgtagtaatcatccttcaacttgttgtaatatatacgctcata--atattccaaatcagattcacaggtatatt 246  Q
      | ||||||||||||||||||||||||||||||||||||||||  || ||||||||| ||||||||||  |||||| ||||||||||||| ||||| ||    
T  24840632 --acatcgaattagagattttaaacttgtagtaatcatccttcagttttttgtaatatttacgctcatagtatattctaaatcagattcacgggtatgtt 24840535  T
Q  247 ctgattttcggtacatatca 266  Q
    ||||||||| |||| |||||    
T  24840534 ctgattttctgtacgtatca 24840515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 42 - 199
Target Start/End: Complemental strand, 1368473 - 1368319
Alignment:
Q  42 tgtttagcaatatcattaatcgtcttacacgagttacctgccattctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgttgtaacaaaacg 141  Q
    ||||| |||||||| |||| |||||||| | |||||||||| |||||  |||||||||||||||||||||| |||||   ||| ||||||||||||||||    
T  1368473 tgtttggcaatatctttaaccgtcttacgcaagttacctgcaattctaaaagcatgtctcaaaaggtcggtcaagga---atccttgttgtaacaaaacg 1368377  T
Q  142 tacaacgatatatcgaattagagattttaaacttgtagtaatcatccttcaacttgtt 199  Q
     |||||||||||||||||  ||||||||||||| ||| | ||||||||||||||||||    
T  1368376 gacaacgatatatcgaatcggagattttaaactcgtaatgatcatccttcaacttgtt 1368319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 119 - 230
Target Start/End: Complemental strand, 1786311 - 1786200
Alignment:
Q  119 gtaatctttgttgtaacaaaacgtacaacgatatatcgaattagagattttaaacttgtagtaatcatccttcaacttgttgtaatatatacgctcataa 218  Q
    |||||||||||||||||||||||  |||| |||| ||||||||||||||||||| |||||||||||||||||||  || ||||||||| | ||||||||     
T  1786311 gtaatctttgttgtaacaaaacgggcaacaatatttcgaattagagattttaaaattgtagtaatcatccttcagtttattgtaatatttgcgctcatag 1786212  T
Q  219 tattccaaatca 230  Q
    ||||||||||||    
T  1786211 tattccaaatca 1786200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 211 - 308
Target Start/End: Complemental strand, 4300844 - 4300747
Alignment:
Q  211 gctcataatattccaaatcagattcacaggtatattctgattttcggtacatatcaatagtatgattgttattaagaaccctaataaccagaattggt 308  Q
    ||||||| ||||||||||||||||||  || ||||| |||| |||||||| || |||||||||| |||||||||  ||||||||||| | ||||||||    
T  4300844 gctcatagtattccaaatcagattcattggcatattttgatgttcggtacgtaacaatagtatggttgttattacaaaccctaataatcggaattggt 4300747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 240 - 320
Target Start/End: Complemental strand, 1367010 - 1366930
Alignment:
Q  240 gtatattctgattttcggtacatatcaatagtatgattgttattaagaaccctaataaccagaattggtcatccttctctg 320  Q
    |||| |||| ||||||| |||||| ||||| |||| ||||||||| |||||||||||||| |||||| || |||| |||||    
T  1367010 gtatgttctaattttcgatacataacaataatatggttgttattacgaaccctaataaccggaattgatcctcctcctctg 1366930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 33 - 206
Target Start/End: Original strand, 43306306 - 43306479
Alignment:
Q  33 aaaacaaagtgtttagcaatatcattaatcgtcttacacgagttacctgccattctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgttgt 132  Q
    |||||| | ||| |||||||||  |||| ||||||||  |||||| | || ||||| |||||||||||||| ||||| |  |||||||||||||||||||    
T  43306306 aaaacagaatgtctagcaatatttttaaccgtcttacgtgagttatcagctattctagaagcatgtctcaataggtcagacaaggagtaatctttgttgt 43306405  T
Q  133 aacaaaacgtacaacgatatatcgaattagagattttaaacttgtagtaatcatccttcaacttgttgtaatat 206  Q
    ||||||||| ||||||||||| ||||| |||||||| || || ||||||||||||| |||||||||||||||||    
T  43306406 aacaaaacggacaacgatataccgaatcagagatttcaatctcgtagtaatcatccgtcaacttgttgtaatat 43306479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 33 - 153
Target Start/End: Complemental strand, 22923646 - 22923526
Alignment:
Q  33 aaaacaaagtgtttagcaatatcattaatcgtcttacacgagttacctgccattctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgttgt 132  Q
    |||||||| |||||||||||||  ||||||||||||| |||||||||| ||||||| |||||||||||||||| |||||| ||| ||||||||||||||     
T  22923646 aaaacaaaatgtttagcaatatgcttaatcgtcttacgcgagttacctaccattctggaagcatgtctcaaaatgtcggtcaagaagtaatctttgttgc 22923547  T
Q  133 aacaaaacgtacaacgatata 153  Q
    ||||||||| |||||||||||    
T  22923546 aacaaaacggacaacgatata 22923526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 33 - 153
Target Start/End: Complemental strand, 22928299 - 22928179
Alignment:
Q  33 aaaacaaagtgtttagcaatatcattaatcgtcttacacgagttacctgccattctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgttgt 132  Q
    |||||||| |||||||||||||  ||||||||||||| |||||||||| ||||||| |||||||||||||||| |||||| ||| ||||||||||||||     
T  22928299 aaaacaaaatgtttagcaatatgcttaatcgtcttacgcgagttacctaccattctggaagcatgtctcaaaatgtcggtcaagaagtaatctttgttgc 22928200  T
Q  133 aacaaaacgtacaacgatata 153  Q
    ||||||||| |||||||||||    
T  22928199 aacaaaacggacaacgatata 22928179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 33 - 153
Target Start/End: Complemental strand, 22984578 - 22984458
Alignment:
Q  33 aaaacaaagtgtttagcaatatcattaatcgtcttacacgagttacctgccattctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgttgt 132  Q
    |||||||| |||||||||||||  ||||||||||||| |||||||||| ||||||| |||||||||||||||| |||||| ||| ||||||||||||||     
T  22984578 aaaacaaaatgtttagcaatatgcttaatcgtcttacgcgagttacctaccattctggaagcatgtctcaaaatgtcggtcaagaagtaatctttgttgc 22984479  T
Q  133 aacaaaacgtacaacgatata 153  Q
    ||||||||| |||||||||||    
T  22984478 aacaaaacggacaacgatata 22984458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 33 - 153
Target Start/End: Complemental strand, 22998166 - 22998046
Alignment:
Q  33 aaaacaaagtgtttagcaatatcattaatcgtcttacacgagttacctgccattctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgttgt 132  Q
    |||||||| |||||||||||||  ||||||||||||| |||||||||| ||||||| |||||||||||||||| |||||| ||| ||||||||||||||     
T  22998166 aaaacaaaatgtttagcaatatgcttaatcgtcttacgcgagttacctaccattctggaagcatgtctcaaaatgtcggtcaagaagtaatctttgttgc 22998067  T
Q  133 aacaaaacgtacaacgatata 153  Q
    ||||||||| |||||||||||    
T  22998066 aacaaaacggacaacgatata 22998046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 22720669 - 22720737
Alignment:
Q  44 tttagcaatatcattaatcgtcttacacgagttacctgccattctcgaagcatgtctcaaaaggtcggt 112  Q
    |||||||||||  ||||||||||||| | |||||||| ||||||| |||||||||||||||||||||||    
T  22720669 tttagcaatatgcttaatcgtcttacgcaagttacctaccattctggaagcatgtctcaaaaggtcggt 22720737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 159
Target Start/End: Original strand, 22768297 - 22768411
Alignment:
Q  33 aaaacaaagtgtttagcaatatcattaatcgtcttacacgagttacctgccattctcgaagcatgtctcaaaaggtcggttaaggagtaatctttgttgt 132  Q
    |||||| | |||||||||||||  ||||||||||||| ||||||| || |||||||  ||||| |||||||||||||            |||||||||||    
T  22768297 aaaacagaatgtttagcaatatgtttaatcgtcttacgcgagttatctaccattctgaaagcaagtctcaaaaggtc------------atctttgttgt 22768384  T
Q  133 aacaaaacgtacaacgatatatcgaat 159  Q
    ||||||||| |||||||||||| ||||    
T  22768385 aacaaaacggacaacgatatattgaat 22768411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 22721471 - 22721511
Alignment:
Q  114 aaggagtaatctttgttgtaacaaaacgtacaacgatatat 154  Q
    |||||||||||||| ||||||||||||| ||||||||||||    
T  22721471 aaggagtaatctttcttgtaacaaaacggacaacgatatat 22721511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 306
Target Start/End: Complemental strand, 22691558 - 22691515
Alignment:
Q  263 atcaatagtatgattgttattaagaaccctaataaccagaattg 306  Q
    ||||||||| |||||||||||| |||||||||||||| ||||||    
T  22691558 atcaatagtctgattgttattacgaaccctaataaccggaattg 22691515  T

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