View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1380_high_31 (Length: 311)
Name: NF1380_high_31
Description: NF1380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1380_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 29 - 298
Target Start/End: Original strand, 37781252 - 37781521
Alignment:
| Q |
29 |
aaagccaaggtaataggaacaataattagcatcagtggggcaatggtgatgatattttacagaggagtagaaattgatatttggacttccaatataaacc |
128 |
Q |
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| T |
37781252 |
aaagccaaggtaataggaacaataattagcatcagtggggcaatggtgatgatattttacagaggagtagaaattgatatttggacttccaatataaacc |
37781351 |
T |
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| Q |
129 |
ttatgcatccacatcataaccaaaatggacttatggaaccactacatgccgacaataaactcttgggtattccatgtgccataggaagttgttgctcttt |
228 |
Q |
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| T |
37781352 |
ttatgcatccacatcataaccaaaatggacttatggaaccactacatgccgacaataaactcttgggtattccatgtgccataggaagttgttgctcttt |
37781451 |
T |
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| Q |
229 |
ttctttgtggttaattatccaggttagcaaaataatactactaaagaccatttagatatattagttatct |
298 |
Q |
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| T |
37781452 |
ttctttgtggttaattatccaggttagcaaaatagttctactaaagaccatttagatatattagttatct |
37781521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 32 - 256
Target Start/End: Original strand, 37807878 - 37808108
Alignment:
| Q |
32 |
gccaaggtaataggaacaataattagcatcagtggggcaatggtgatgatattttacagaggagtagaaattgatatttggacttccaatataaacctta |
131 |
Q |
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| T |
37807878 |
gccaaagtaataggaacagtaattggcattggtggggcaatgcttatgatattttacaaaggagtggaaattaatatttggtcttccaatatcaacctta |
37807977 |
T |
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| Q |
132 |
tgcatccacatcataaccaaaatggacttatggaaccactacatgccgac------aataaactcttgggtattccatgtgccataggaagttgttgctc |
225 |
Q |
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| T |
37807978 |
tgcaccaacataggaaccaaaatgggcttatggatccaaaacatagggacttcagtaataatatagtgggtgttccatgtgcaatagcaagcgtttgctc |
37808077 |
T |
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| Q |
226 |
tttttctttgtggttaattatccaggttagc |
256 |
Q |
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| T |
37808078 |
tttttctttatggttaatcatccaggttagc |
37808108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 37768522 - 37768474
Alignment:
| Q |
64 |
tggggcaatggtgatgatattttacagaggagtagaaattgatatttgg |
112 |
Q |
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| T |
37768522 |
tggggcattggtgttgacattttacaaaggagtagaatttgatatttgg |
37768474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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