View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1380_high_35 (Length: 280)
Name: NF1380_high_35
Description: NF1380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1380_high_35 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 30 - 280
Target Start/End: Complemental strand, 43446863 - 43446616
Alignment:
| Q |
30 |
cagatgaggtccaagtcatatgaaatgcacacgtggagtttcatggttagaagatgatgaggtcaagagtttgaaagtactattgagtaggacatagaag |
129 |
Q |
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| T |
43446863 |
cagatgaggtccaagtcatatgaaatgcacacgtggagtttcatggttagaagatga---ggtcaagagtttgaaagtactattgagtaggacatagaag |
43446767 |
T |
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| Q |
130 |
tgagttgtgaggtgggtgaggatagaaagtaaagcttaagaatcagagtgtatgaaaccatggaagcggtgtagaatcagaaatgaattgagttcaattt |
229 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43446766 |
tgagttgtgaggtgggtgaggatagaaaataaagcttaagaatcagagtgtctgaaaccatggaagcggtgtagaatcagaaatgaatcgagttcaattt |
43446667 |
T |
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| Q |
230 |
gtttgtcgttggtacagattcactttttcactatagctaagagaagtgaag |
280 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43446666 |
gtttgtcgttggtacatattcactttttcactatagctaagagaagtgaag |
43446616 |
T |
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